Citrobacter enshiensis: P2W74_14145
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Entry
P2W74_14145 CDS
T09732
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cens
Citrobacter enshiensis
Pathway
cens03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cens00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P2W74_14145 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cens03019
]
P2W74_14145 (rne)
03009 Ribosome biogenesis [BR:
cens03009
]
P2W74_14145 (rne)
Enzymes [BR:
cens01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
P2W74_14145 (rne)
Messenger RNA biogenesis [BR:
cens03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
P2W74_14145 (rne)
Ribosome biogenesis [BR:
cens03009
]
Prokaryotic type
rRNA processing factors
P2W74_14145 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
WET39134
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All DBs
Position
2912865..2916092
Genome browser
AA seq
1075 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRNAVNAIETREDGVRCVIVPNDQME
TPHYSVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPEVPPA
PEPTESVVKATAPKVAAVTAATAAAQPGLLSRFFGALKSMFAGSEEAKPVEQAEPKAEEK
PERQQDRRKPRQNNRRDRNDRRDNRNERSDRGDRGDRSEGGENREENRRNRRQPSPQNAE
PRDNRQPTGNDVSEKTKSGDEQQAPRRDRNRRRSEDKRQAQQEVKALNLDEQPVQEVEQE
ERVRQPQPRRKQRQLNQKVRYGESAAVDVELAATAVVENVASHAVEQTAPVQRTELAKLD
LPVVADNTAEQEENTDARDNNGMPRRSRRSPRHLRVSGQRRRRYRDERYPVQSPMPLTIA
CASPEMASGKVWIRYPVVRPQDVQVEELREQEIVPVVAQPAAIEPQAAAVEQVVETPVQT
ETVAVEPQPVVVESIVVETTHPEAIATAVDEQPQVIAQADVPVAEEIIAEANAVEEIQET
VTTESVEVVAAPDVVAEVAEPVVVAEEEPKVEVIAPVAAAEVIEETAPVAVESLPESHHA
TAPMTRAPAPEYVPEAPRHSDWQRPEFAFEGKGAAGGHSATHQASAQPTRPQPVE
NT seq
3228 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaggaagagttgcgtgtcgcccttgtagat
gggcaacgtctgtacgacctggatatcgaaagtcctggacatgaacagaaaaaagcaaac
atctataaaggcaaaattacccgtattgaaccgagtctggaagccgcttttgttgattac
ggcgctgaacgtcacggtttcctcccgttaaaagaaattgcccgcgaatatttccccgct
aattacaacgcccatggtcgtccaaacattaaagatgtgttgcgcgaaggccaggaagtt
attgttcagatcgataaagaagagcgtggcaacaaaggtgccgcgctgaccacatttatc
agtctggcggggagctatctggttctgatgccgaacaacccgcgtgcgggtggcatttct
cgtcgtattgaaggcgatgatcgtaccgagctaaaagaagcgctggcgagcctggaattg
cctgatggcatggggctcatcgtgcgtaccgctggcgtcggcaaatctgccgaagcgctg
cagtgggatctgagcttccgtcttaaacactgggaagcgattcagaaagccgctgaaagc
cgccctgcgccattcctgatccaccaggaaagcaacgttatcgttcgcgctttccgtgac
tatttacgtcaggatattggtgaaatcctcatcgataatccgaaagtgctcgaactggcg
cgccagcacatcgcggccttgggtcgcccggatttcagcagcaaaattaagctctacacc
ggtgaaattccgctgtttagccactatcagatcgaatcgcagatcgaatctgcattccag
cgtgaagtccgcttgccttccggtggctccatcgttatcgacagcaccgaagcgttaacc
gctatcgatatcaactctgctcgcgccacgcgcggcggtgatatcgaagagacggcgttc
aacaccaacctggaagcggcagatgaaatcgcccgtcagttgcgtctgcgtgacctcggc
ggcctgattgttatcgacttcatcgatatgaccccggttcgccaccagcgcgcagttgaa
aaccgtctgcgtgaagcggtgcgccaggatcgcgcgcgtattcagattagccatatttcc
cgctttggcctgttggagatgtcccgccagcgcctgagtccatctttgggtgaatcaagc
catcacgtttgcccacgctgtagcggcaccggcaccgttcgtgataacgaatcgctgtcc
ctgtctattctgcgtctgatcgaagaagaagcgctgaaagaaaacacccaggaagtgcac
gcaattgttcctgtgccgatcgcttcatacctgctcaacgaaaaacgtaacgcggttaac
gcgattgaaacacgtgaggatggcgttcgctgtgtgatcgtaccaaacgatcagatggaa
accccgcactactccgtgctgcgtgtacgtaaaggcgaagaaacgccaaccctgagctat
atgctgccgaaactgcatgaagaggcaatggcattaccttctgaagaagagtacgccgag
cgtaaacgccctgagcaaccggcgctggcaacttttgcaatgccagaagttccgcctgca
ccagaacctacagagtccgttgttaaagcaactgcgccgaaagtggccgcagttaccgca
gccaccgccgctgcacagccgggtctgttaagccgtttctttggcgcgttgaaatccatg
ttcgccggcagtgaagaagcgaaacccgttgagcaagcagaacccaaagcggaagagaaa
ccggaacgtcagcaggatcgccgcaagccgcgccagaacaatcgccgcgatcgtaatgat
cgccgcgataaccgcaatgagcgtagtgaccgtggcgaccgtggcgaccgttcagaaggc
ggtgaaaaccgcgaagagaaccgtcgtaaccgccgtcagccttcgccgcaaaatgcagag
cctcgtgacaaccgtcagccgacgggcaatgacgttagcgaaaaaaccaaatccggtgat
gagcagcaagcgccgcgtcgcgatcgtaatcgtcgccgtagcgaagacaaacgtcaggcg
cagcaagaagttaaagcgctcaaccttgatgaacaaccggtacaggaagttgaacaggaa
gagcgcgttcgtcagcctcaaccgcgtcgtaaacaacgccagttgaaccagaaagtgcgt
tacggtgagagtgcagcggttgacgtcgaactcgctgccactgcagtcgttgagaatgtc
gcctcccacgcggtagagcagaccgcaccggttcaacgtactgagcttgcgaaactggat
ctgccggttgtcgcagataacactgcagaacaggaagagaacaccgatgctcgcgacaac
aacggtatgccgcgtcgctcacgtcgttcacctcgtcacctgcgcgtcagcggccaacgt
cgtcgtcgctaccgtgacgagcgctacccggttcagtcaccgatgccgttgactatcgcc
tgtgcgtccccggaaatggcgtctggcaaagtgtggatccgttacccggttgttcgtcct
caggatgtgcaggttgaagagttgcgtgaacaagagatcgtaccggtagtagcccaaccc
gccgcgattgagccgcaagcggctgccgtcgagcaggttgtcgagacaccagttcagact
gaaacggtcgctgtcgagccacagcctgttgttgtggaatccattgttgtggaaaccacg
cacccggaagcgatcgcgacagccgttgatgaacagccacaggttatcgcgcaagcagat
gtccctgttgcagaggaaatcattgctgaagcgaacgctgtggaagagattcaggaaacc
gtaacgaccgaatctgtggaagttgtcgctgcaccagacgtggttgcagaggtggctgaa
cctgtcgttgtggcggaagaagaaccaaaagtcgaggttattgcgcctgttgccgcggct
gaagtcattgaagagaccgcgcctgtcgccgttgaatctctgccagaaagccatcacgcc
actgcgccgatgacccgtgctccggcaccggaatatgttccagaagcaccgcgtcacagc
gactggcagcgtcctgagtttgcctttgaaggcaaaggggctgccggtggtcacagtgca
acgcatcaagcgtcagcgcaaccaacgcgtcctcagccggtagaataa
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