Cyanobacterium endosymbiont of Epithemia turgida: ETSB_0400
Help
Entry
ETSB_0400 CDS
T03622
Symbol
rpoC2
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ceo
Cyanobacterium endosymbiont of Epithemia turgida
Pathway
ceo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ceo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ETSB_0400 (rpoC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ceo03021
]
ETSB_0400 (rpoC2)
03400 DNA repair and recombination proteins [BR:
ceo03400
]
ETSB_0400 (rpoC2)
Enzymes [BR:
ceo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ETSB_0400 (rpoC2)
Transcription machinery [BR:
ceo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ETSB_0400 (rpoC2)
DNA repair and recombination proteins [BR:
ceo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ETSB_0400 (rpoC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
Apocytochr_F_C
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
BAP17259
UniProt:
A0A077JC54
LinkDB
All DBs
Position
632489..636424
Genome browser
AA seq
1311 aa
AA seq
DB search
MTFYNHIVDKGRLKKLIAWAYRNYGSTKSSQMADNLKDLGFRYATKAGVSISIDDLTIPP
TKKGLLDSAEQSIRATQDRYAKGEITEVERFTKVIDTWNSISEELKNEVIRNFQETDPLN
SVYMMAFSGARGNMSQVRQLVGMRGLMADPQGEIIDLPIKTNFREGLTVTEYVISSYGAR
KGLVDTALRTADSGYLTRRLVDVSQDVIVRELDCGTKRGLKVVAMKDGDRVKIPLADRLL
GRVLAEDIVVDGQVLAQRNQSIDPELASLISEHVEEVMVRSPLTCEAARSVCQQCYGWSL
AAGRLVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGEVARVIKAPNNGTVTWGKGL
STRKVRTRHGDEAFQVEIAGDIIWTPNGSGKKVANSVTPGSFIFVADGTEVGPDQLLAEV
TNARIQKSTERATKDVTTDLAGEVLFAQLMPEEKTDRQGNSTRTAQRGGLLWVLSGQVYN
LPPAAEPVVANGDKVKPGTILAETKLVSVSGGVVRTVTGSREIEIITASVLLDEAEVKME
GTGSREQYVIHTAEGQQFLLLAAPQTKVQNHSIIAELIDDRYQTNTGGILRYGGIEVSKG
SRKTGYEITKGGSLLWIPEETHEVNKDISLLLSEDGQFVEAGTEVVKDIFCASSGVVEVV
QKNDILREIIIKPGDFYFDVDPDKVSIENGALIPPGTQVLSDVTTGSLCQGEWIESPDGL
GLLLRPVEEYLVSDEPLAPSQGSINDDQGRTIELVPCQKLFFKDGERVKSVDGTQLLSTQ
LVLEIYQKESEHGTNLVADIELKTDENANCQRLQLVILESLVLRRDLDSDPHGGKIQTNI
LVSNGEQIPPGAVVAKTEIQSTSIGEVRGIKQGIEAIRRILVVRDDDLETITVDKKPIVR
PEDLMVADAELAAGVKVQSSGRVVAVSQTQDNSGFEVVLRRARPYRVSPGAILHIDDGDL
VQRGDNLVILVFERSKTGDIIQGLPRIEELLEARKPKESCILARKPGITQVEYSDDEMVD
VKIIEDDGTVSEYPILPPQNVMVSDGTRVEVGDQLTDGPANPHEILEVFFDYYVDLLGVY
GAAVKGLRAAQKFLVNQVQMVYQSQGIDISDKHIEVIVRQMTAKVRVDDGGDTTMLPGEL
VELRQIEQVNEAMAITGGAPARYTPILLGITKASLNTDSFISAASFQETTRVLTEAAIEG
KSDWLRGLKENVIIGRLIPAGTGFHTHEELSMGNVEIDSERLSRVTAYNKSESEKSCSWE
SFVSSSDSNSSEHLLKSNLDEVDEDMVLDDNIARAYTKSDIPWELDSNTTE
NT seq
3936 nt
NT seq
+upstream
nt +downstream
nt
atgacattctataatcacatcgttgataaaggtcgtttaaaaaagttaattgcttgggct
taccgaaactatgggtctacgaaaagctctcaaatggctgataatttaaaagatttagga
tttcgctatgccaccaaagctggagtgtcaattagcattgatgacttaacaattcctccc
actaaaaagggattactcgatagtgctgagcaatcaatacgtgccactcaagatcgctat
gctaaaggagaaattactgaggttgaacgctttactaaagtaattgacacttggaatagt
atatcagaagaattaaaaaatgaagtaattcgtaattttcaagaaaccgatcccctcaat
tcggtatatatgatggcattttccggcgcacgaggaaatatgagtcaagtccgtcaatta
gtaggaatgcggggcttaatggccgatcctcaaggggaaattattgacttacccattaaa
accaacttccgagaagggttaaccgtaacagaatacgtgatttcttcctatggagcacgt
aaaggattagtagatacggcattacgaacagccgactcaggctatttaactcgtcgttta
gtggatgtttcccaagatgtgattgtgagggaattagactgtggaactaagcggggacta
aaagtggttgccatgaaagatggtgatcgtgtcaaaattcccctagcagaccgtttatta
ggacgggtactagctgaagatattgtcgtagatgggcaagtgttagctcagcgcaatcaa
agtattgatccagaacttgcttccttgattagtgaacatgtcgaagaagtcatggtgcga
tctcctttgacctgtgaggcagctcgctcagtctgtcagcagtgctatggttggagttta
gctgctggtcgcctcgtggatttaggggaagcagtaggtattattgctgctcaatctatc
ggagaaccaggaacgcaattaactatgcggactttccacactggaggagtctttaccggg
gaagtagccagggtaatcaaagctcccaacaacggaaccgtaacttggggaaaaggattg
agcactcgtaaagtacggactcgtcatggagatgaagcctttcaagtagaaattgcaggg
gatatcatttggactccaaacggctcagggaaaaaagtagccaactccgttaccccaggc
tcctttatctttgtggctgatggaacggaagttggcccagaccagctattagctgaagtg
actaatgcacggatacaaaagtcaactgaacgggcaaccaaagatgtaaccactgattta
gcaggggaagtgctttttgcccaattaatgccagaagaaaaaacagatcgccagggaaat
agcacccgtactgctcaacgaggggggttactgtgggtgctgtcagggcaagtctataac
ttgccgccagcagcagaacccgttgtcgctaatggagataaggttaaaccggggacgatt
ttggcagaaacgaaattagtctcagtcagtgggggtgtagtgcgcactgtaactggtagt
cgtgaaattgagattattacagcctcagttctattagatgaagctgaagtcaagatggaa
ggtaccggaagtcgagaacaatatgttatacatacagccgaaggacagcagtttttattg
ttggcagctcctcaaaccaaagtacaaaatcattccatcattgctgaattaattgatgat
cgctatcagactaatactggcggaattttacgctatggtggcattgaagtatccaaagga
agtcgcaagacagggtatgaaataactaaggggggaagtttgttatggattcctgaagaa
actcatgaagttaataaagatatttcattactattatccgaggatgggcagtttgttgaa
gcaggaactgaagtcgtcaaagatattttctgtgccagcagtggagtggtcgaagtagtt
caaaaaaatgatattcttcgagaaattattattaaaccgggagacttttactttgatgtt
gacccagataaagttagcattgaaaacggcgcattaattcctccaggaactcaagtgtta
tctgatgttactactggaagtctgtgtcaaggagaatggattgaaagtcccgatggatta
ggcttgctgctgcgtccagttgaagaatatcttgtttcagacgaaccactagctccttct
caaggatccattaatgacgatcagggacggactattgagttagttccttgtcaaaaacta
ttttttaaagacggagaacgagttaagtcagtcgatggcacccagttgttaagtacgcag
ctagttttagaaatttatcagaaagaatcggaacatggaacaaatctcgtagctgacatt
gaactaaaaactgatgaaaacgctaactgtcaacgattacagttagttattttagaatct
ttggttttacgtcgagatcttgatagtgatcctcatggaggcaagatccaaactaatata
ctggtatccaatggagagcaaattccccctggggctgtggtggctaagacagaaattcag
tctacttctatcggtgaagtacgaggaattaagcaaggaattgaagcaattcgccgaatt
ttagtagtacgggatgacgacttagaaaccattactgttgacaaaaaacccatagttagg
ccagaagacttaatggtagctgatgctgaattagccgccggcgtcaaagtacagtcgtcg
ggacgggtggtagctgtctcccaaactcaggataattcagggtttgaggttgttttacgt
agagctcggccttatagggtctctcctggagctattttgcatattgacgatggagattta
gtccaacggggggataatttagtcatattggtgtttgaacgttctaaaactggggatatc
atccaaggactgcctcgaattgaggaattgttagaagctcgtaagccgaaggagagttgt
atactagctcgaaaaccaggtattactcaagttgagtattcagatgatgaaatggtggat
gtaaagattattgaagatgacggaacagtgagtgaataccccattcttcctccccagaat
gtgatggtgtctgatggaactcgtgtggaagttggtgatcaattaaccgatggaccggca
aatcctcatgaaatcctagaagtattttttgattattacgtggacttgctaggggtttat
ggagctgctgttaagggattacgagctgcccaaaaattcttagtaaatcaagtacaaatg
gtttatcagtcacaagggattgatatttctgataagcatattgaagtcattgttcgccag
atgaccgctaaggttcgggtagatgatggaggagataccaccatgttaccgggggaatta
gttgagttgcgccaaattgaacaggtcaatgaagcgatggctatcacaggaggtgcgccc
gctcgatataccccaattcttttgggaattaccaaagcttccttaaatacagactcgttt
attagtgcggcttcttttcaagagacaactagggttttgaccgaggcagcgatagagggt
aaatctgactggttacggggtctcaaagaaaatgtgattatcggtcgtttaattccagcg
ggaacaggttttcatacccatgaggagctctccatggggaatgtagaaatcgactcagaa
cggttatctcgtgttactgcatataacaagagtgaatcagaaaaatcttgctcatgggag
tccttcgtttcttcctcagactctaactcatcagaacacttattaaagtccaatttagat
gaagtagatgaggatatggttcttgatgataatattgcccgtgcttacactaaatctgat
atcccttgggaacttgattctaatactacagagtaa
DBGET
integrated database retrieval system
