Cyanobacterium endosymbiont of Epithemia turgida: ETSB_1535
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Entry
ETSB_1535 CDS
T03622
Name
(GenBank) ATP-requiring DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ceo
Cyanobacterium endosymbiont of Epithemia turgida
Pathway
ceo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ceo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ETSB_1535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ceo03019
]
ETSB_1535
03400 DNA repair and recombination proteins [BR:
ceo03400
]
ETSB_1535
Enzymes [BR:
ceo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ETSB_1535
Messenger RNA biogenesis [BR:
ceo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ETSB_1535
DNA repair and recombination proteins [BR:
ceo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ETSB_1535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HTH_40
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
Helicase_Sgs1
ResIII
Terminase_5
SAM_GIDA_C
HTH_29
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
BAP18268
UniProt:
A0A077JKY1
LinkDB
All DBs
Position
2212573..2214705
Genome browser
AA seq
710 aa
AA seq
DB search
MMMSQSNSLEQSLKHFFGYDRFRPGQANIIEEALENHDLLVIMPTGGGKSLCFQLPALLK
PGLSVVVSPLIALMQDQVDTLLDNGIGATFLNSSLSSQEIRSREQALVQGKIKLLYVAPE
RLLNEKFAPFLGFISQKIGISAFAIDEAHCVSEWGHDFRPEYRQLKQLRKCYPQVPMFAL
TATATKRVQEDIIKQLGLRQPRIHITSFNRPNLYYDVKPKKPNNYNTLLSYIREQKGTGI
VYCLSRRSVDEIAFYLQNDGIDALPYHAGMDDQTRRLNQHRFIRDNVQVIVATIAFGMGI
NKPDVRFVIHYDLPRNLEGYYQESGRAGRDGEPAKCILFFSLSDVKRIEYIINQKTSYQE
RKVSRQQLRQVVDYAEGVDCRRTIVLRYFGERFLGNCGNCDNCLNPKPIEDWTIEAQKFL
SCVIRCNEKFGMTHIIDVLRGSKKRKIEQYGHHLLSTYSIGKDKSLAEWKMLGRSLIHQN
LLDETSDGFSVLKLNERSWEILKKQRKVNIPVSQKSSLKILIDNKYGATETEFLFDRLRD
LRKQLADNSNIAPYVIFSDLSLKLMAQLKPQNLKEFSRISGVTDFKTNQYGEKFLSEIML
FVREQASLNPLASSSNMITLQLYQQGLEPVEIAKIRGLKESTIYSHLSELIEERQPVDIN
KLVFPVKQDIIIQAIKKIGDGTLTPIKEYLGDHYSYSEIKLVRAWYRSKQ
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgtctcaatctaactctcttgaacagtccttaaaacatttttttggttatgat
aggtttcgtcctggacaagcaaatattatcgaagaagccctagaaaatcatgacttatta
gtaattatgccgacaggaggagggaagtccctttgttttcaactgcctgcattacttaaa
cctggtctaagtgtggtagtctcccccttaattgctctaatgcaagatcaagtagacact
ctgttagataatggcattggggcaacttttctcaatagtagtctcagttctcaagaaata
cggtctcgtgaacaagcacttgttcaggggaaaataaaactgctgtatgtcgcaccagaa
agattattaaatgagaaatttgccccttttttaggttttatttctcaaaaaattgggatt
tctgctttcgcaattgatgaagctcattgtgtgtctgaatgggggcatgatttccgtcct
gaataccgacaactaaaacaacttcgtaaatgctatcctcaagttcctatgtttgcttta
actgcaacagctaccaagcgggtacaagaagatatcatcaagcagttaggattaagacag
ccaagaattcatattactagttttaatcgtccgaacctttactacgatgtaaaacctaaa
aaacctaacaactataacacattattgtcctatattcgtgaacaaaaagggacaggaatt
gtatattgtctcagtcgtcgttcagtagatgaaattgccttttatttacaaaatgatgga
attgatgctttaccctatcatgcaggaatggatgatcagacaagacgcttaaatcaacac
cgttttattcgagataatgtacaagtgatagtagcaactattgcctttggaatgggcatt
aataaacctgatgttcgcttcgttattcattatgatttacctcgtaatttagagggttat
tatcaagagtcaggacgggcaggaagggatggagaaccagccaagtgtatcttgtttttt
agtttatctgacgtcaaaagaattgaatatataattaatcaaaaaacttcttatcaagaa
cgaaaagtatcccgtcagcagttacgtcaagtagtagactatgctgaaggtgttgactgt
cgtcgcaccattgttttacgatattttggggaaagatttttaggaaactgtggtaactgt
gacaattgtcttaacccaaaacctatagaagactggacaattgaagcacaaaaatttctt
tcttgtgttatacgttgtaatgaaaaatttggcatgactcatattatcgatgtcttacgg
ggatcgaaaaagcgtaaaatagaacaatatggtcatcatcttttgtcaacttatagtatt
ggaaaagacaaaagtttagctgaatggaaaatgctcggacgatctttaattcaccaaaat
ttattagatgaaactagcgatggattttctgtattaaaacttaacgaacggagttgggaa
attttaaaaaaacagagaaaggtaaatattccagttagtcaaaaatcatccttaaaaatt
ttaatagataataaatatggggctactgaaactgagtttctctttgatcgattaagagat
ttaaggaagcagttagcagacaatagtaatatagctccatatgtcattttttctgattta
agtttaaaattgatggcacaattaaaaccccaaaatttaaaagaattctctagaatttcc
ggagtaactgacttcaaaacaaatcaatatggagaaaaatttttatcagaaattatgtta
tttgttcgagaacaagcttctctaaatcctttagcaagttcaagtaatatgataacttta
cagctataccaacaaggattagagccggtggaaattgctaagatacgagggttgaaagaa
agtacaatttattctcacctctcggaattaattgaagaaagacaaccagtagatatcaat
aaattggtttttccagtcaaacaagatattattattcaagccattaagaaaattggggat
ggcaccctaactcctattaaagaatatttaggagatcattacagctacagtgagattaaa
ttagttagagcttggtatcgaagtaaacaataa
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