Cyanobacterium endosymbiont of Epithemia turgida: ETSB_1639
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Entry
ETSB_1639 CDS
T03622
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ceo
Cyanobacterium endosymbiont of Epithemia turgida
Pathway
ceo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ceo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ETSB_1639 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ceo03019
]
ETSB_1639 (deaD)
03009 Ribosome biogenesis [BR:
ceo03009
]
ETSB_1639 (deaD)
Enzymes [BR:
ceo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ETSB_1639 (deaD)
Messenger RNA biogenesis [BR:
ceo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ETSB_1639 (deaD)
Ribosome biogenesis [BR:
ceo03009
]
Prokaryotic type
rRNA helicases
ETSB_1639 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
HEM4
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
BAP18357
UniProt:
A0A077JH46
LinkDB
All DBs
Position
complement(2362953..2364395)
Genome browser
AA seq
480 aa
AA seq
DB search
MTISFHSLGLSENRVHKLETLGFTTPTEIQCKAIPLILEGHDILGQSQTGTGKTAAYSLP
IMEQIDTNNSNIQALVLTPTRELAQQVALALKDFSTERQLYILTVYGGQSIEKQIRSLQR
GVQIVVGTPGRVIDLLDRKKLVLNNLKWAVLDEADEMLSMGFIDDVKKILRQTPDQRNTA
CFSATMPREIRELVNQFLKSPVTVTIDQPQAAPDKIEQHLYGVPRGWSKLKALQPILEIE
IPDTAIVFVRTKQTASELTSKLQEAGQSVDEYHGNLSQSQRERLVHRFREGKVRIVVATD
IAARGLDVENLSHVINYDLPDNAETYIHRIGRTGRAGKKGTAISLVEPIDRRMIRQIERR
IRQKIELCSIPNRSQVEAKRLEKLQRQIQDSLAGERMASFLPIVRELSDEYDPQAIAAAA
LQMVYDQDCPKWMRTDWEVPEAGISKPIIQGNNRKDNSKPRRNNSGKKSDRKTIGHHRGR
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgaccatttcctttcatagcttaggactctctgagaaccgtgttcataaattagaaacc
ctaggttttacgactccaacagagattcaatgtaaagcaattcctttaattttggaggga
catgacattctgggacaatcccagacaggaacagggaagacagcagcttattccttgccc
attatggagcagattgatacaaacaattccaacatacaggcacttgttctaaccccaacc
cgtgaacttgcccaacaggttgctcttgctcttaaggacttttctactgaacgccaattg
tatattttgactgtttatggaggtcaatcgattgaaaagcaaattcggagtttacaacga
ggtgtacaaattgttgttggaactccgggaagggttattgacctattagatcgcaaaaag
ctggttttaaataatttaaaatgggctgttctcgatgaagcagatgaaatgctcagtatg
ggctttatcgacgatgtaaaaaaaattctaaggcaaacccccgaccaacgcaacactgct
tgtttctcagcaactatgcctcgtgaaatccgagaattagttaaccagttcctcaaatct
cctgttacagtgactatagaccagcctcaagccgcacctgataaaattgagcaacatctt
tatggtgttcctcgcggttggtcaaaactcaaggcgttacaaccaattttagaaattgaa
atccctgacacagccattgtttttgttcggactaaacagacagcttctgaacttaccagc
aagttacaagaagccgggcaaagtgttgacgaataccatggtaatctaagtcagtcccaa
cgagaacgattggtccatagatttcgagagggtaaagttaggatcgttgtggctacggac
attgcggcaagagggttagatgttgagaatttaagccacgttattaattacgatttgccg
gataatgcagaaacttatattcatcggattggacgaactggccgagcagggaaaaaaggg
acagcaatatccttagttgaaccaattgaccgtcgcatgatacgtcagattgaacggcga
attcgacaaaaaatagaattgtgtagtattcctaaccgctctcaagtggaagctaagcga
ctagaaaaactccaaaggcagattcaagattccttggcaggggagcggatggcttcattt
ttacctattgtgcgagaacttagcgacgaatatgatccccaggctatagctgctgcggct
ttacagatggtttatgatcaagactgccccaagtggatgagaactgactgggaagtcccc
gaagcaggaatatctaaaccaattattcaggggaataatcgcaaagataattctaaaccc
cgtcgtaataactcaggtaaaaaatcagatcgtaagacaatcggccatcatagagggcgt
tag
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integrated database retrieval system
