Crinalium epipsammum: Cri9333_0162
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Entry
Cri9333_0162 CDS
T02373
Name
(GenBank) putative exonuclease, RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cep
Crinalium epipsammum
Pathway
cep03410
Base excision repair
cep03430
Mismatch repair
cep03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Cri9333_0162
03430 Mismatch repair
Cri9333_0162
03440 Homologous recombination
Cri9333_0162
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cep03400
]
Cri9333_0162
DNA repair and recombination proteins [BR:
cep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Cri9333_0162
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Cri9333_0162
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Cri9333_0162
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
HTH_11
HTH_PafC
Motif
Other DBs
NCBI-ProteinID:
AFZ11162
UniProt:
K9VUL4
LinkDB
All DBs
Position
201210..203711
Genome browser
AA seq
833 aa
AA seq
DB search
MPDQLQWQIEQLIQPPATFIIAVKRHAPGLDGRYAAQLLWQRGIRDTEKLAGYLNPNSYQ
PASPFEFGQEMHFCVERLQQARQAGEVVAIWGDFDADGITSTSVLWEGLGQFFTKNQQLR
YYIPNRLTESHGLNNSGIDQLAKAGTTLIITCDTGSTNISEIEYAQQLGIDVIVTDHHTL
PPERPPVVAIINPRYLPTNHPLFNLSGVAVAYKVVEALYETLPDVPQQPVENLLDLVAIG
LIADLVQLSGDCRYLAQKGIERLQQQTKQPTRPGVAKLLELCQRSGDRPTDISFGLGPRI
NAVSRIQGDASFCVELLTSKNKQRCEQLALETELANARRKSLQKDVTQQVKDKLSQLDLS
TTSVIVLVDSQWSSGVLGLVAGQVAQEYGRPTIILSTESDNNFSEKVEQGSRGDLDNNHS
PQPTPHVNTPHASNLTPDSSLLTPHPSPLTPLARGSARSVNNIDLYQLVRSQAHLLHRFG
GHPFAAGLSIPIENIPLFTEAINQQLRQLSLASGALMMPVIQADLTVTVAELGKELFREL
KLLEPCGMGNPVPKLLIKNCSFKNVWNRNTQDAKGKKIQYIKTDFEIVDLTTDKGFPGLW
WGHYKDEVPTGRCDAIVELDYNNYKQRPEVRLIAVRPTVEDRQFSTNVQLDWILDWRNLS
DEEKSINTQSTSALSHQSSALILEECPTRWDDLQVWLRRAIQTNNKLAIAYPQPEQLPAN
KIWEQLVGIAKYLSRTGKTVTLDQIQDKLGVSDRALQLGLRTLTQLGFQITTFDNHIQII
WSSDSYFHHTEDQLTSASEQFLAAVAEEQFYQRYFYVVPLTTIQSMARETVYR
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaccaactacaatggcaaattgagcagctaattcaaccccctgctaccttcatt
atagcagttaaacgtcatgcacctggattagatggacgttacgcagcacaattattatgg
caacgcggaattagagatactgaaaaactggcaggatatttaaatccaaactcatatcaa
cctgcaagtccgtttgaatttgggcaggaaatgcacttttgcgtggaaagattgcaacaa
gcgcgtcaagcaggcgaagtagttgcgatttggggggactttgacgcagatggaattaca
tcaactagcgttttgtgggaaggactaggacaattttttactaaaaatcagcagctacga
tactatattcctaatcgcctgacagaatctcacggactgaacaattcaggaattgatcaa
cttgcgaaagctggaactactttaattattacttgtgatacgggcagtacaaatattagt
gaaatcgagtatgcccaacaattagggattgatgttattgttacagaccaccatactcta
ccaccagaacgcccgcctgtagtagcaattattaacccccgctatttaccaacaaatcac
cctctgtttaatctttctggtgttgctgttgcttataaggtggtggaagcactttatgaa
actttgcctgatgttccgcaacaaccagttgaaaatttattagatttagtagctattggt
ttaattgctgatttagtacaactaagtggtgattgtcgctatttagcacaaaaaggtatt
gaacgtttacaacagcaaactaaacaaccaactcgtccaggtgtggcgaagctattagaa
ttatgccagagaagtggcgatcgccccacagatatttcctttggtcttggtcctagaatt
aatgctgttagtcgtatccaaggtgatgcttctttttgtgttgaattacttaccagtaaa
aataaacagcgttgtgaacaacttgcgctagaaaccgaattagctaacgcccgtcgcaag
tctttacaaaaagatgttactcagcaagtaaaagataagttatctcaactcgacttatca
accaccagtgtaattgttcttgtagattcccaatggtctagcggtgttttaggtttagtt
gctggtcaagtcgcccaggaatacggcagacctacgattatattaagtacagaaagtgat
aataattttagtgaaaaagtggagcaggggagcagaggagatttagataataatcactcg
ccccaacctacgccccatgttaacactcctcacgcttcaaaccttacacctgactcttca
ctcctcacccctcacccctcacccctcacccctttagctagaggttcggcgcgttctgta
aataatattgatttatatcagttagtgcgatcgcaagcacatttattacatcgcttcggt
ggtcatccttttgctgctggcttaagtattcctattgaaaatattcctttatttacagaa
gcaattaatcaacagttacggcagctaagtcttgcttctggcgcgttaatgatgccagta
attcaagcagatttaactgtaaccgtagcggagttaggtaaagaattatttagggaatta
aaactgctagaaccttgtggtatgggaaatcctgttccaaagctattaattaaaaattgc
tcgtttaaaaatgtttggaatcgtaatactcaggatgcgaaaggcaaaaaaattcaatat
attaaaactgactttgaaatagtagatctcaccaccgataaaggttttcctggtttgtgg
tggggacactataaagatgaagtacccacaggaagatgtgatgctattgtggaacttgat
tataataactacaaacaacgtccagaagtgcgcttaattgctgtacgtcctactgtcgag
gatcgtcaatttagcaccaatgtacagttagattggattttagactggcgcaaccttagc
gatgaagaaaaatctattaatacacagtctacatcagcacttagtcatcaatcttcagca
ttaattcttgaagaatgtcctactcgctgggatgacttacaagtatggttgcgacgggca
attcaaactaataataaactagcgatcgcatatccacaacccgaacaactacccgctaat
aaaatttgggaacaattagtaggaattgctaaataccttagtcgcacaggtaaaacagta
actttagatcaaattcaggataagttaggagtgagcgatcgcgcccttcagctaggactc
cgtacccttacacagcttggttttcagattactacattcgacaaccatatccaaatcatt
tggtcatctgacagctatttccaccatacagaagatcaacttactagcgcaagcgagcaa
tttttagcagcagtagccgaagaacaattttatcaacgttacttctatgttgttcccctg
actactattcaatctatggctcgtgaaactgtttataggtaa
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