Crinalium epipsammum: Cri9333_1435
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Entry
Cri9333_1435 CDS
T02373
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cep
Crinalium epipsammum
Pathway
cep03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Cri9333_1435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cep03400
]
Cri9333_1435
Enzymes [BR:
cep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Cri9333_1435
DNA repair and recombination proteins [BR:
cep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Cri9333_1435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AAA_22
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AFZ12329
UniProt:
K9VXQ1
LinkDB
All DBs
Position
1625190..1628651
Genome browser
AA seq
1153 aa
AA seq
DB search
MAFSSIIRALGRSPLTSEFLSKLDRQQFVRLTGVPRLPKGLVASAIAQTEEKNLFVVTAT
LEEAGRWAAQLEAMGWQTVHFYPTSEASPYEPFDPESEMTWGQMQVLADLVIGHGSSVAN
GNGNKSGKWAIVATERSLQPHLPPPDAFSPFCLRLNQGETWELGVFSQKLAQLGYDRVPL
VEMEGQWSRRGDIIDVFPVSAELPVRLEWFGDELDQMREFDPGTQRSLDQIKHLLLTPTD
FRSIVTEVLNKTNSQETTEEESVRRLLGKAFENVASLLDYLPENTLVAIDEDDQCRAHSD
RWVEHADEQLSAISSQQSDLRRLHRSFDESIGEITAKFKHLYLSELIDENNGINLASRPL
PTTPHQFAKIADVLRKERDRRFGVWIVSAQPSRSVSLLQEHDCPAQFVPNPRDYPAIDKL
QIQHTPVAVKYSGLAELEGFILPTFRLVVITDKEFFGQHSLATPSYIRKRRRAASKQVDP
NKLEAGDYVVHRNHGLGKFLKLESLTLNHETRDYLVIQYADGLLRVAADQVGSLSRFRHT
ADQAPALHKMSGKAWEKTKGKVRKAIKKLAVDLLNLYAKRSQQTGFTYPPDSPWQEELED
SFPYQPTPDQLKATQDVKRDMESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTAGKQVVFL
APTTILTQQHYHTLKERFAPYPVNVGLLNRFRSAEERRNIIQRLATGELDIVVGTHQLLS
KEIKVKDLGLLVVDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPRTLYMSLSGIREMSL
ITTPPPSRRPIKTHLSSFDPEAIRTAIRQELDRGGQVFYVVPRIEGIEETGAKVREMIPG
CRLAIAHGQMDESELEATMLAFSSGEADILLCTTIIESGLDIPRVNTILIEDAHKFGLSQ
LYQLRGRVGRAGIQAHAWLFYPKQSKLTDAARQRLRAIQEFTQLGSGYQLATRDMEIRGV
GNLLGAEQSGQMDAIGFDLYMEMLEESIREIRGQEIPKVDDTQIDLQLTALIPADYIQDL
EQKMSAYRAVASANSKEELNNIAAEWSDRYGEIPKAAKQLLCVMELKQVAKQLGFSRIKP
EAKQHIVLETPMEEPAWNLISANLPDHLRSRFVYSKGKVTIRGLAVLKADKQLESLIDWL
GKMQGAIPEAVMV
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atggcattctcttctattattcgtgccttggggcgatcgcctctcaccagtgaattcctc
tctaagctggatcgccagcaatttgtgcgactaactggcgttccccgcttgcctaaaggg
ttagtagcgtctgcgatcgcacaaacagaggaaaaaaatttgtttgtggtgacggcaacc
ctagaagaagctggacgttgggcagcgcaattagaagctatgggttggcagacggtacac
ttttacccaacttcggaagcgtcaccttatgaaccctttgatcctgagtcggagatgact
tggggacaaatgcaggtattggcggatttggtcatcggtcatgggtcatcggttgctaat
ggaaatggcaacaaatccggtaaatgggcaatagtcgctacggagcgatcgcttcagcct
catttgcctcctcccgatgcttttagcccgttctgtttgaggcttaaccaaggggaaact
tgggaattaggcgtttttagtcaaaagttagcgcaactaggctacgatcgcgttcctctg
gtggaaatggaggggcaatggagtcggcgcggagatattattgatgtgtttccggtgtcg
gctgaacttccagtacggttggaatggtttggcgatgagttggatcaaatgcgggagttt
gatccaggtactcaaagatctttggatcagattaagcatttacttttgactccaactgat
tttcgctcgattgttactgaagttttaaataaaacgaactcgcaagaaacaacagaggaa
gaaagtgttaggaggcttttagggaaggcgtttgaaaatgttgcttccttgttggattat
ttgcctgagaatactttagttgctattgatgaagatgaccagtgtcgcgctcatagcgat
cgctgggtggaacacgcggatgaacagctatcagctatcagcagtcagcaatcagattta
cgcagattgcatcgtagttttgatgaatctattggggaaataacagctaagtttaagcat
ctttatttgtcggagttgattgatgaaaataatgggattaatttggctagtcgtccactg
cctacaactccccatcaatttgccaagatagcagacgttttgagaaaggaacgcgatcgc
cgtttcggagtttggattgtttcggcacaaccttcgcgatctgtctccttgctgcaagaa
catgattgtccggcgcagtttgttcctaacccccgtgattatccagctattgataagtta
caaattcaacatacgcctgtagctgtaaaatattcgggtttggcagaattagaagggttt
attctgcctacttttagattagttgtaattacagataaagaattttttgggcagcattct
ttagcaactcccagttatattcgcaagcgtcgtcgcgctgcttctaaacaagttgacccg
aataagttagaagctggtgattatgtcgttcaccgtaatcatgggcttggtaagtttctg
aagttagaaagtttaacccttaaccatgaaactcgtgattatttagttattcaatatgct
gatggtttattacgggtagctgcggatcaggttggttctttatctcgatttcgtcatacg
gctgatcaagcaccagcacttcataagatgtctggtaaagcttgggaaaaaactaagggt
aaagtccgtaaggcgattaagaagttagcggtcgatttgctgaatttgtatgccaagcga
tcgcaacaaacaggttttacttacccgcctgattcaccttggcaagaggaattagaagat
tctttcccttatcaaccaacgccggatcagttaaaggcgactcaagatgtgaaacgggat
atggaaagcgatcgcccaatggatcgtttagtctgtggtgatgttggttttggtaaaaca
gaagtagcaattcgcgctatttttaaagctgttactgctggtaaacaggtagtattttta
gcaccaactactattttaacacagcaacattatcacactcttaaagaaaggtttgcacct
tatccggttaatgttggtttacttaatcgtttccgttctgctgaagaacgccgtaatatt
atccaaagattagctactggtgaattagatatagttgttggtactcatcagttgttaagt
aaggaaattaaagtcaaagatttaggtttgttggtagtagatgaagaacagcgatttggt
gttaatcaaaaggaaaagattaaatccttaaaaactcaggtagatgttcttactctgagt
gctacgcctattccgcgaactctttatatgtccttatcggggattagagaaatgagttta
attactactccaccgccatcccgtcgcccgattaaaactcatctttcttctttcgatcct
gaagccattagaactgcaattcgtcaagaattagatcgtggtggacaggtattttatgtt
gtaccgcgaatagaaggaattgaagaaactggcgctaaagtgcgggaaatgatcccagga
tgtagattagcgatcgcacatggtcaaatggatgaatcagaattagaagcaaccatgtta
gcttttagttcaggggaagcagatattcttctttgcactactattattgaatcgggatta
gatattcccagagttaatacaattctaattgaagatgctcataaatttggattatctcag
ttatatcaattgcgggggcgtgtgggacgcgcaggtattcaagcacacgcatggttattt
tatcctaaacaaagtaaattaactgatgctgcaaggcaacgtttaagagctattcaagaa
tttacccagttaggttcaggttatcagttagcaacacgggatatggaaattcgcggtgtt
ggtaacttattaggtgcggaacagtcgggacaaatggatgcgatcggtttcgatttatat
atggaaatgttggaagaatctatccgtgaaattcgcggacaggaaattcctaaagttgat
gatacgcagattgatttacaacttactgcattaattcctgctgactacatccaagattta
gagcaaaagatgagtgcatatcgtgctgttgcttctgctaatagtaaagaagagttaaat
aatattgcagcagaatggagcgatcgctatggtgaaattcccaaagctgctaaacaatta
ttatgtgttatggaattaaaacaagttgctaaacaactcggttttagtcggatcaaaccg
gaagccaagcaacatattgttttagaaactccaatggaggaacctgcttggaatttaatt
tctgctaacttaccagatcatctgcgatcgcgttttgtttactctaaaggtaaggtaaca
atacgtggtttagcagtacttaaagctgataagcagttagaaagcttaattgattggtta
ggcaaaatgcaaggtgcgattccagaagcggtcatggtgtag
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integrated database retrieval system
