Crinalium epipsammum: Cri9333_3774
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Entry
Cri9333_3774 CDS
T02373
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cep
Crinalium epipsammum
Pathway
cep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cri9333_3774
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cep03019
]
Cri9333_3774
03400 DNA repair and recombination proteins [BR:
cep03400
]
Cri9333_3774
Enzymes [BR:
cep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Cri9333_3774
Messenger RNA biogenesis [BR:
cep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cri9333_3774
DNA repair and recombination proteins [BR:
cep03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Cri9333_3774
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
AFZ14584
UniProt:
K9W469
LinkDB
All DBs
Position
4249155..4250612
Genome browser
AA seq
485 aa
AA seq
DB search
MNASDTTSWQQVRSTFKQIWGYEDFRPPQGEIVRSLLSKQDSLIVMPTGGGKSICFQLPA
LLQTGLTLVVSPLVALMENQVQELKERKLPAALLHSEVPSYQRKQTLQALERQQLRLLYL
SPETLFSAPVWERLCQPQLKINGLILDEAHCLVQWGETFRPAYRRLGAVRPALLKFKPAG
TKIAIASFTATADPTAQATIRQVLQLQQPQIFLINPYRNNLNLKVQIVWTPRGRKQQLLQ
FIQARLKQTGLVYVRTRKDSEELAEWLKQQNYATAAYHAGLSPEQRRKIESSWLTGEIPF
VICTCAFGMGINKPNVRWIAHFHTPFLLSEYVQEIGRAGRDGKPADALTLISEPTGFLNP
EDKERQNFFAEKLRLQYQKAEQIARKIPRQGELTAVTKQFNDGAVALSLLHSAGQLQWQD
PFNYIRHSSGKSRSFDELNKLQQQIQSQMSEYLKTRDCRWQFLLRAFGFTKEATNFNCGH
CDNCR
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcttctgatacaacatcttggcaacaagttcgttctactttcaagcaaatttgg
ggctatgaagatttccgtccgcctcaaggggaaattgttcgcagcttattatcgaagcaa
gattctttaattgtgatgcctactggtggaggaaagtcaatttgttttcaacttccagca
ttactacaaacaggattaactttggtagtttctccgcttgtagcattaatggaaaatcaa
gttcaggaattaaaagagcgaaaattaccagcagcattattacatagtgaagtaccatct
taccagcgcaagcaaactttacaagcgttggaaaggcaacagctaagattactatattta
tcaccagaaactttattcagtgcgccagtttgggaaaggttatgtcaaccgcaattaaag
attaatgggttaattttagatgaggcgcattgtttggtgcaatggggggaaacatttcga
ccagcttatcgacgactgggtgcagtaagaccagctttacttaagtttaaacctgctggg
acaaagatagcgatcgcatctttcaccgctacagcagatcctacagcacaagcaactatt
cgccaagttttacaactacaacaaccacaaatatttttaattaatccttaccgcaacaat
cttaacctcaaggtgcaaattgtttggacacctagaggacgcaaacaacaattattacaa
tttattcaagcaagattaaaacaaactggtttagtctatgtccgcactcgtaaagatagt
gaggagttagcagaatggttaaagcaacaaaattatgccaccgcagcttatcatgcaggg
ttaagtcctgaacaaagacgtaaaattgaatctagttggttaactggggaaatacctttt
gtgatttgtacctgtgcatttggtatgggtattaataaacccaatgtgcgttggatagct
cattttcatacgccttttttgctgtctgaatatgtccaagaaatcggacgcgccggacga
gatgggaaaccagcagacgcacttactttaattagtgaaccaactgggtttttaaatcca
gaggataaagaaaggcagaattttttcgctgaaaagttgcgcttacaataccaaaaagct
gaacaaattgctcgaaaaattccacggcagggggaattaacagcagtaacaaagcagttt
aatgatggtgcagttgctctttctttgttgcacagtgctggacaattacagtggcaagac
ccatttaattatatccgtcattcgtcaggaaaatctagatcttttgacgaattgaataaa
ttacagcaacaaattcaatctcaaatgagtgaatatctcaagacgcgggactgtcgttgg
cagtttttgttacgcgcttttgggtttaccaaagaagcaactaattttaattgtggacat
tgtgataattgtagataa
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