Crinalium epipsammum: Cri9333_3954
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Entry
Cri9333_3954 CDS
T02373
Name
(GenBank) Ribocuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
cep
Crinalium epipsammum
Pathway
cep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cri9333_3954
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cep03019
]
Cri9333_3954
Messenger RNA biogenesis [BR:
cep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Cri9333_3954
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AFZ14762
UniProt:
K9W4U3
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All DBs
Position
4473716..4475518
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AA seq
600 aa
AA seq
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MTNKPLIITKKMANTNNGSQPSLKIIPLGGLHEIGKNTCVFEFNDEIILLDAGLAFPTDS
MHGINIVLPDMTYLRENSHKIKGMIVTHGHEDHIGGIPYHLKQFDIPVIYGPRLAMALLE
GKLEEAGVADRTILKRVMPRDVVRIGESFFVEFIRNTHSIADSFTIAIHTPVGVVIHTGD
FKIDHTPVDGEFYDLHRLAEHGEKGVICLISDSTNSEVPGFTASERSVYPNLDRIIGEAK
GRVLLTTFASSVHRINMVLEIAQKRNRVVSVVGRSMLNVIAQARNLGYIKCPDNLFEPLQ
AIQNFPPEKVLILTTGSQGEPLAAITRIANNEHRNIRIRQGDTVIFSANPIPGNTIAVVN
TIDKLMMQGANVVYGRDKGIHVSGHGCQEDQKMMIALTKPKFFLPVHGEHRMLVKHSQTA
QSMGIPAENMVIIDNGDVVELSEDAMRVTGKVPSGLQLVDNAGVVHDNVMKERQQLADDG
VVTVAAAVSWEGKLMTKPEVHLRGVVTAVERSLLQALVQKTIENTLSDRWASFARSFGEE
GVEVDWAGLETQIERDLQRLIRRELQSRPLLVFLLQSPAEPPARPGRRRQRPSVKASLAV
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgactaataaacccttaattattacgaagaaaatggctaatactaataacggatctcag
ccgagtctcaaaattattcctttagggggattgcatgaaattggcaagaatacctgcgtt
tttgaattcaatgatgaaatcattctgttagatgctggtttggcatttcctacagatagt
atgcacggcattaatattgtgttgccggatatgacttatttgcgggaaaacagccacaaa
attaagggcatgattgtcacgcatggtcacgaagaccatattggcggtattccttatcac
cttaagcagtttgatattccagttatctacggtccgcgtctagcaatggcgttacttgaa
ggtaaattagaagaagcaggtgttgccgatcgcacaatattaaaacgagtaatgccgcgc
gatgttgtacgaattggtgagtcgttttttgtagaatttattcgcaatactcactcaatt
gctgatagtttcacaatagctatacacactcctgtcggcgttgttattcatacaggtgat
tttaaaattgaccatactccagttgatggtgagttttatgatttacataggttagcagag
catggtgagaaaggtgtaatttgtttaattagtgattctactaactcagaagtacctggg
tttacagcgtcagaacgttctgtttatcctaatcttgacagaattatcggtgaggcaaaa
ggacgagtactgctaacaacttttgcttcatcagttcacagaattaatatggttttggaa
atagcccagaagcgtaatcgggttgtttctgtggtaggtcgttcaatgttgaatgtgatc
gcccaagcgcggaatctcggttacattaaatgtccagataacttatttgagccgttacaa
gcaattcagaatttccctcctgaaaaagtgttaattctgaccacaggttctcaaggggaa
ccactagcagcaatcactagaattgctaacaatgaacatcgcaacatccgcattcgtcaa
ggcgatacagtaattttctcggcaaatcccatcccaggaaatacgatcgcagttgtcaat
accatcgacaagctgatgatgcagggcgcaaacgtggtttatggtcgtgataaaggcatt
cacgtttcaggtcatggctgtcaagaagaccaaaaaatgatgattgccctgactaaaccg
aaattcttcttgccagttcacggtgagcatcggatgctagttaagcactcccaaactgcc
caaagtatgggtatccctgctgaaaatatggtgattattgataacggggatgttgtggag
ttatctgaagatgctatgcgtgtcacgggtaaagtaccttcaggtctgcaactggtagat
aatgctggtgttgtccatgacaatgtgatgaaagaacgccagcaattagctgatgatggt
gtggtgacagtagcggcggctgtcagttgggaaggcaagctgatgactaagccagaagtg
catctgcgaggtgttgtcactgcggttgagcgatcgcttttacaagcattagtccaaaag
acgattgaaaatactttaagcgatcgctgggcaagttttgctcgttcctttggtgaggaa
ggggtagaggttgattgggcaggtttagaaactcaaatcgagcgcgacctgcaacgtttg
atccgacgcgaacttcagagtcgtccgttattggtgttcttactgcaaagtcctgcggaa
ccaccagctagacctggaagaagacggcagcgccctagtgtgaaggcaagtttagcagtt
taa
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