Crinalium epipsammum: Cri9333_4247
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Entry
Cri9333_4247 CDS
T02373
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cep
Crinalium epipsammum
Pathway
cep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cri9333_4247
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cep03019
]
Cri9333_4247
03400 DNA repair and recombination proteins [BR:
cep03400
]
Cri9333_4247
Enzymes [BR:
cep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Cri9333_4247
Messenger RNA biogenesis [BR:
cep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cri9333_4247
DNA repair and recombination proteins [BR:
cep03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Cri9333_4247
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HTH_40
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
DUF3294
DUF6115
LAGLIDADG_1
Helicase_Sgs1
PSMA-like_N
Motif
Other DBs
NCBI-ProteinID:
AFZ15036
UniProt:
K9W4C4
LinkDB
All DBs
Position
complement(4792458..4794644)
Genome browser
AA seq
728 aa
AA seq
DB search
MPQLASLEQALKHYFGYDNFRPGQRQIVEEALEKRDLLILMPTGGGKSLCFQLPALLKPG
LTVVVSPLISLMQDQVEALLDNGIGATFLNSTVDWADVRSREVGILNGKIKILYVAPERL
LTDKFTLFLEQVQRQVGISAFAIDEAHCVSQWGHDFRPEYRQLKQLRQRYRDVPIFALTA
TATNRVREDIIQQLALRQPSIHISSFNRPNLYYEVQLKQKQAYLQLLKLIRQYEGSGIVY
CLSRRHVDEVAFRLQKDGISALPYHAGMTDEERAYNQTRFIRDDVQVMVATIAFGMGINK
PDVRFVIHYDLPRNLEGYYQESGRAGRDGEPARCTLLFGTGDLRTINYLIEQKSDAQEQR
VARQQLQKMIDYAEGTDCRRKIQLSYFGERFAGNCDNCDNCRDPKPEEDWTIEAMKFLSC
VARCQERFGMIHIIDVLRGSARKKIEQYGHHLLSTYGIGKDKSVEEWKMLGRSLLHQGLV
DETTDGYRILKLNAHSWEVMKRQREVYIAVPKKHTTDTAKYNPKAIDVEILFHRLRSLRK
QVADEQSIAPYVVFADSSLKLMAQQQPQTLDEFAQISGVGAHKLAQYGERFVDEIKTHRQ
EQQQSINTQKALVSVPEEQPKSATYTQLMTLELHQRGLNILEIAKQRQLRSTTIASHLAE
LMELNLPVDVNQLVPRKHQEAILQAIKVVGAESLKIIYEHLGENYSYEEIKLVRAWWLHG
SNSQQAID
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgccccaacttgcctctttagaacaggcacttaaacactactttgggtatgataatttt
cgccctggacagcgccaaattgtagaagaagctctggaaaagcgcgatttactgatttta
atgcccacaggtggcggtaagtctctgtgttttcaattacccgctctgcttaaacctggt
ttaactgtggtggtgtcgccactaatttcgttaatgcaagatcaggtggaagctttatta
gataatggtattggtgcgacatttttgaatagcactgtagattgggcagatgtgcgatcg
cgtgaagttggtattctaaatggcaagattaaaattctctacgttgctccagaacgttta
ttaacagataaatttaccctatttttagaacaggtacagcgccaagttggtatttctgct
tttgctattgatgaagcacactgcgtttctcagtggggacatgattttcgtccagaatat
agacaattaaaacagttacgccaacgctatcgggatgtaccaatatttgctttaactgca
actgctactaatcgtgtacgtgaagatattattcaacagttagctttaagacaaccaagt
attcatatttctagttttaaccgcccgaatctttattacgaagtacaacttaaacaaaaa
caagcatatcttcagttattaaaattaattcgtcagtatgaaggctccgggattgtttat
tgtctgagccgtcgtcatgtagatgaagttgcttttaggctacaaaaagatggtatatcg
gctttaccttatcatgcaggaatgactgacgaagaacgggcatataatcaaacccgtttt
attcgagatgatgtgcaagtcatggtagctacgattgcttttgggatgggtattaataaa
ccagatgtgcgatttgtgattcattatgatttacctcggaatttagaaggttattatcaa
gaatctggacgtgctggtagagatggggaacctgcgcgttgtacactattatttggtact
ggcgacttaagaactattaattatttaattgagcaaaaaagtgatgctcaagagcagcga
gttgcgcgtcaacaactgcaaaaaatgattgattatgcagaaggtacagactgccgccgt
aagattcaattaagttattttggagagcgatttgcaggcaattgtgataattgtgataat
tgccgtgatcctaaaccagaggaagattggactattgaggcgatgaagtttttatcttgt
gttgctcgttgtcaagaacgctttggaatgattcatattattgatgttttacgtggctct
gcaaggaaaaagattgagcaatatggtcatcatttgttgtcaacttatggtataggaaaa
gataaaagtgtagaagagtggaagatgttagggcgatcgctcttacatcaaggtttagtt
gacgaaactactgacggttatcgcattttaaaactcaatgctcatagctgggaagtgatg
aagcgccagagggaagtttatattgctgttcctaaaaaacatacaactgacacagctaag
tataatcccaaagcgattgatgtcgagattttatttcatagattgcgatcgctccgcaaa
caagtagcagatgaacagtcaattgcaccttatgttgtctttgctgattccagtctgaaa
ttgatggcgcagcaacaaccccaaaccttagatgaatttgcccaaatttccggcgtaggc
gcacataaacttgctcagtatggagaacgttttgttgatgaaattaaaacacatcgacaa
gagcaacaacaatcaataaatactcaaaaagcattagtttcagtaccagaagaacagcct
aaatctgcaacttatactcagttaatgacactagaattacatcagcgagggttgaatatt
ttagaaattgccaaacaacgccaactccgcagtactactatagctagtcatctcgctgaa
ttaatggaactaaacctacccgtagatgttaatcaattagttccccgtaagcatcaagaa
gcaattttacaagctatcaaagttgttggtgctgagtcactaaaaataatttatgaacac
ttaggagaaaactatagttatgaggaaattaagttagtaagagcttggtggttgcatggc
tctaattctcaacaagctattgattga
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