Crinalium epipsammum: Cri9333_4428
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Entry
Cri9333_4428 CDS
T02373
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cep
Crinalium epipsammum
Brite
KEGG Orthology (KO) [BR:
cep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cep03016
]
Cri9333_4428
Enzymes [BR:
cep01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Cri9333_4428
Transfer RNA biogenesis [BR:
cep03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Cri9333_4428
Prokaryotic type
tRNA splicing ligases
Cri9333_4428
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AFZ15211
UniProt:
K9W4U2
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All DBs
Position
complement(4993952..4995133)
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AA seq
393 aa
AA seq
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MPYKPLNLSTPVPILSWANHELGHQEIKMAKNTASLPFVFKHVALMPDVHLGKGALVGSV
IATKEAIIPAAVGVDIGCGMAAIKTAYTADQLEGKLKKIRLDIEAAIPVGFNQNKDTDKT
VDNWQGWQQFKDLHPGVQHLESKAMKQMGSLGGGNHFIEVCLDTENSVWLMLHSGSRNIG
NMLAQCHISTAKELTRLANTQLPDSDLAYFVQGTPEFAAYWRDLQWAQNYARFNREAMMA
RFKRIIEKHLAGGKQAKPLLEVNCHHNYAEQEVHFGEEVYVTRKGAVRAREQDYGIIPGS
MGAKSFIIKGKGNAHSYCSCSHGAGRLMSRNKAKENFSLDDLLEQTQGVECRKDTGILDE
IPGAYKPIEQVMANQSDLVEVVATLKQVVCVKG
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgccatataaaccactcaacttatcaacgccagttcctatattgtcttgggcaaaccac
gaactagggcatcaggaaatcaaaatggcgaaaaacactgcctccctgccctttgtattc
aagcacgttgccctgatgccagatgttcaccttggtaaaggtgctttggtcggttctgta
attgctactaaggaagcgataattcctgctgctgtcggagtagatattggttgcgggatg
gcagctattaagactgcttacactgctgatcaattagaaggcaaactcaagaaaattcgt
ctggatattgaggcagcaattccagttgggttcaatcaaaataaggacaccgacaaaaca
gttgataattggcaaggctggcagcagttcaaagatttgcatcccggcgtacaacattta
gaatccaaagcgatgaagcaaatgggttcattaggcggaggaaatcattttattgaggtt
tgcctagatactgaaaacagtgtgtggctaatgctgcattctggttcacgcaatatcggc
aatatgttggcacaatgccacattagtacagctaaggaactcaccagacttgctaatacg
caactaccagattcagatttagcttattttgtccaaggtacaccggagtttgccgcatac
tggcgcgatttacaatgggcgcaaaactacgcccgattcaaccgagaagcgatgatggca
cgtttcaagcggattattgaaaaacatttagcaggtggcaaacaagctaaaccactattg
gaggttaattgtcatcataactatgcagagcaggaagttcattttggtgaagaagtttat
gtcacccgcaagggtgcggttcgcgctcgtgaacaagactatggcataattcctggttcg
atgggggctaaatctttcattattaaagggaaaggtaatgcccacagctattgttcttgc
agtcacggggcggggcggttgatgtcacgcaataaggcaaaggaaaactttagccttgat
gatttgcttgaacaaactcaaggggttgaatgtcgtaaggatacagggattttagacgaa
attcctggtgcttacaaacctattgagcaggtaatggcaaatcagtctgatttggtcgag
gtagtagcaactctgaagcaggttgtgtgtgtgaaggggtaa
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