Cutibacterium equinum: O6R08_02355
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Entry
O6R08_02355 CDS
T09514
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cequ
Cutibacterium equinum
Pathway
cequ03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cequ00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
O6R08_02355 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cequ03400
]
O6R08_02355 (mfd)
Enzymes [BR:
cequ01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
O6R08_02355 (mfd)
DNA repair and recombination proteins [BR:
cequ03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
O6R08_02355 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
UB2H
RecG_dom3_C
Glyco_tran_WecG
AroM
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
WCC80392
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Position
525298..528870
Genome browser
AA seq
1190 aa
AA seq
DB search
MTSGGLTSLLSREPVLSRCVEDAVTRRTPTLDVQVAPSARPAVAAVLSQGLTGSGRLPVL
LVTSTFREAEESVATLKTWLHPDDVCYYPSWETLPHERLSPRTDTVGRRMEVLRRLCGTE
GEMPKVVVAPVRSLLQPQVAGLGRIKPVRLAVGQEHDLTELAAELVNAAYSRVDMVERRG
EFAVRGGILDVFPPVLEHPVRIDFFGDQIEEMTSFAVADQRSTDDTHQELICAPCRELIL
TDEVRSRAKTLLPDHPELADMLERIGDGQAVEGMEALMPALVDQMELLVDVLPEHAMVVL
SDPEMVRSRAADLVRTSEEFLGAGWAAAAGGGQAPIDLAASGYRSLADVRAHCLERGMAW
WSMSSFSLDAPAADVIIDDVTDDDVVTSAPHTVNPHLQAVEPWRGDVEAAVKDLTARLDD
GWTVVLCAEGEGIAKRMRELFGEHQVAAKLVDEVDADITEPCVQILRLHQRHGFAAESLK
LVVASTGDLVDSQDPAVSGERRMPRRRRNQIQPLELTSGDLVVHEQHGVGRYVEMVQRTV
GGATREYLVIEYAPSKKGQPGDRLFVPVNSLDQVTRYVGGDAPSLDRMGGADWRKRKSRA
RKAVREIAAELIKLYAARQATKGHAFGPDTAWQRELEDAFAYVETPDQLTTIADVKHDME
QVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFQTFTERYAGFP
VKVAALSRFQTDAEARETLEGLKRGTVDVVVGTHRLLAKEVEFKDLGLVIVDEEQRFGVE
HKEALKRMRVNVDVLAMSATPIPRTLEMAVTGIREMSTIATPPEERHPVLTFAGPYDEGQ
VVAAIRRELAREGQVFYIHNRVQSIEKTAAKLRELVPEARIVTAHGQMNEKQLEQIMVDF
WERRADVLVCTTIVESGIDISTANTLLIDRADLMGLSQLHQLRGRVGRSRERGYAYFLYP
ADKPLSQTAHDRLATMAAHTDLGAGMAIAMKDLEIRGAGNLLGGEQSGHIADVGFDLYIR
LVGEAVAEFRGDASGAEESEMRIELPVDANLPVDYVETERLRLEMYKRLAEVRSDEEVDA
IAAELVDRYGPMPEPVQALLGVARFRLLCRRVGIHEVVPSGRNIRFSPVHLPESGVMRLK
RLYPGSVVKETAGFVMVPKPTTARIGGQVLGGQQLLDWAGELVRGILQIR
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
gtgacttctggcggattgacctcccttttgtcccgcgagccggtgctctcccgttgcgtc
gaggatgctgtgacccgacgtacccccactcttgatgtgcaggtggctccttctgcccgc
cctgcggtggcggctgtgctcagccaggggctcactggttctgggcggctgccagtgctg
ctggtgacaagcacgttccgggaggccgaggagtcggtggccaccctcaagacgtggctg
caccccgatgacgtctgttattacccgtcctgggagaccctgcctcacgagaggttgagc
ccgcgcaccgacaccgttggtcgccggatggaggtgctgcgtcggttgtgcggcactgag
ggcgagatgccgaaggtcgtcgtcgccccggtgcgatccctgctccagccccaggtggca
ggtctgggacgcatcaagccggtccgcctggcggtggggcaggagcacgacctcaccgag
ctggcggcagagcttgtcaatgccgcctacagccgggttgacatggtggaacgccgtggc
gaattcgccgtgcgtggcggcatcctcgacgtcttccccccggtgctggaacatccggtg
cgtatcgacttcttcggtgaccagatcgaggagatgacctccttcgcggtggccgatcag
cggtccaccgatgacacccatcaggaactcatctgcgctccgtgtcgtgaactcattctc
accgacgaggtccgttccagggccaagaccctgctgcccgaccatcccgaactggcagac
atgctggagcggatcggcgacggtcaggcagttgaggggatggaggccctcatgccagcc
ctggttgatcagatggagctgctcgtcgacgtccttcccgagcacgccatggtcgttctg
tccgatcccgagatggtgcggtcccgagccgcagacctggtccgcacctccgaggagttc
ctgggagcggggtgggcggctgccgcgggtggtgggcaagcccccatcgacctggcagct
tccggttaccgcagcctggccgatgtgagggcccactgtctcgagcgaggcatggcgtgg
tggtcgatgtcctcgttcagcctcgacgctcctgcggccgacgtcattattgacgatgtt
actgacgatgacgtggtcacgagcgccccgcacaccgtcaacccacatctgcaggccgtc
gagccgtggcgcggagacgtcgaggcggccgtcaaggatctcaccgccaggctcgatgac
ggctggacggtcgtgctgtgcgccgaaggtgagggcatcgccaagcgcatgagagagctg
ttcggtgaacaccaggtcgcggccaagctggtcgacgaggtcgacgccgacatcaccgag
ccatgcgtccaaatcctgcggctgcatcagcggcacgggtttgccgcagaatccctcaaa
ctggtggtggcctccaccggagacctcgtggactcccaggacccagccgtcagtggcgag
cgacggatgccccgacgacggcgcaatcagatccagccactggaactgacttccggtgat
ctcgtcgtccatgagcagcacggtgtggggcgatatgtggagatggtgcagcgtaccgtc
ggtggcgccacccgcgagtacctcgtcatcgagtacgccccctccaagaaaggccagccc
ggcgaccgtctcttcgtccccgtcaactccttggaccaggtgacccgctacgtcggtggc
gacgccccgagcctggatcgcatgggtggtgctgactggcgtaagcgcaagtcccgtgcc
cgcaaggctgtccgtgagatcgccgccgaactcatcaagctctatgccgcccgacaggcc
accaagggccacgccttcggtcccgacaccgcctggcagcgggagttggaggacgccttc
gcctacgtcgagacccctgaccagctcaccaccatcgccgacgtcaaacacgacatggag
caggtcgtgcccatggaccgtctggtgtgtggagatgttggttatggcaagaccgagatc
gccgtgcgggccgccttcaaggccgtccaggacggtaagcaggtggccgtcctcgtgccg
acgacgttgctggtccagcaacatttccagactttcaccgagcgttatgccgggttcccc
gtcaaggtggcggccctgtcgcgcttccagaccgacgccgaggcccgcgagaccttggaa
gggctcaagcgcggcaccgttgacgtcgtggtcggtacccatcgtctgctggccaaggag
gtcgagttcaaggacctcggcctggtcatcgtcgacgaggagcagcgcttcggcgttgag
cacaaggaggccctcaagcgcatgagggtcaacgtcgacgtcctggcgatgagcgccacc
ccgatcccacgcaccttggaaatggcggtgacgggcatccgcgagatgagcacgatcgcc
acgccaccggaggagcgtcacccggtgctcacctttgctggcccctatgacgagggacag
gtggtcgcggccatccgtcgcgagttggctcgtgagggccaggtcttctacattcacaac
cgggtgcagtccatcgagaagacggccgccaagctgcgcgaactcgtcccggaggcgcgg
atcgtcaccgcccacgggcagatgaacgagaagcagcttgagcagatcatggtggacttc
tgggagcgccgcgccgacgtgctggtctgcaccaccatcgtcgagtcgggtatcgacatt
tccactgccaataccttgctcattgatcgtgctgacctcatgggcctgtcccagctccac
cagttgcgtggccgtgtcggacgctcccgggagcgcggttacgcctacttcctctacccg
gctgacaagccgctctcccagaccgcccatgatcgcctggcgacgatggccgctcacacc
gatctgggagctggcatggccatcgccatgaaggatctggagatccgcggcgcagggaac
ctgctgggcggcgagcagtccggtcacatcgccgatgtcggattcgacctctacatccgt
ctggtgggtgaggcggtcgcagagttccgcggtgatgccagcggcgccgaagagtcggag
atgcgtatcgaactaccggttgatgccaatcttccggtcgactacgtcgagaccgagcgg
ctccgtctggagatgtacaagaggttggccgaggttcgcagcgatgaggaggtcgacgcc
atcgccgccgagctcgttgatcgatacggtccgatgcccgagccggttcaggctcttctc
ggggtggcgcgattccgcctcctgtgtcgcagggtaggtatccacgaggtggtcccgtct
ggacgcaacatccggttctcgccggtccatctgccggagtcaggagtcatgaggctcaag
aggctgtatccggggtcagtggtcaaggagacggccgggtttgtcatggtgcccaaaccg
actaccgcgcggatcggtggccaggtgcttgggggacagcagctcctcgactgggcggga
gaactcgtcagaggtatactgcagatacggtag
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