Cyanobacterium endosymbiont of Rhopalodia gibberula: RGRSB_0388
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Entry
RGRSB_0388 CDS
T05747
Name
(GenBank) exonuclease SbcD
KO
K03547
DNA repair protein SbcD/Mre11
Organism
cer
Cyanobacterium endosymbiont of Rhopalodia gibberula
Brite
KEGG Orthology (KO) [BR:
cer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cer03400
]
RGRSB_0388
DNA repair and recombination proteins [BR:
cer03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
RGRSB_0388
Archaeal homologous recombinant proteins
RGRSB_0388
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Metallophos
Motif
Other DBs
NCBI-ProteinID:
BBA78975
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Position
631006..632280
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AA seq
424 aa
AA seq
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MIKIVHLSDIHLGSGFTHGQLNPKTGLNTRFEDFTNTLSLCIDRAVREKVDLVLFGGDAF
PDATPPPYVQEAFASQFHRLADAKIPTVLLVGNHDQHSQGDGGASLCIYRTLGVPGFIVG
DSLKTNKISTKNGEIQVITLPWLTHSTLLTRRKTDGLSFEEVQHLLIESLTLALEGEIRQ
LDSQLPTILLGHLMADRANFGSEKFLAVGKGFTIPMSLLIRPEFDYVALGHVHKHQNLNP
TNDPPVIYSGSIERVDFSEEKEDKGYITLEVNKEQVNWQFNPLPSRNFCSININVSEESD
PQSVILKAIQKKFIQNSVVRLIYKIRSEQLELINTGEIYKALEESHSYTIRPELVSQLSR
SRLPELGVGNNLDPISALQAYLDSKEDLKDIVKDMLETAEILLNNDDPNLDISVKQEILP
LKDL
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atgataaaaattgttcatctatctgacattcatcttggtagtggctttacccatggtcag
ctcaatcctaaaacaggtttaaatacccgttttgaagattttaccaacacattaagttta
tgtattgatcgagcggtgagagaaaaggttgatcttgttttatttgggggagatgctttt
cctgatgctacccctcctccctatgttcaagaagcttttgcttctcaatttcatcgtctg
gctgatgccaagattcctacggtattattagttggaaatcatgaccaacattctcaagga
gatggaggtgcaagtctttgtatttataggacattaggggttccaggatttattgtgggg
gacagtcttaaaaccaataaaatttcgactaaaaatggagaaattcaggtgatcacttta
ccttggttaacccattctaccctcttgacccgtcgtaaaactgatggcttatcttttgaa
gaagttcagcatttattaattgaaagtttgaccttagctttagaaggagaaattcgtcaa
cttgattcccaacttccaactattttgttaggtcatctgatggcagatcgtgctaatttt
ggatcagaaaaattccttgctgttggcaagggatttaccattcctatgtctttattaatt
cgtcccgaatttgattatgttgcccttggtcatgttcataaacaccaaaatttaaatcct
actaatgatcctcctgtaatttactcaggaagtattgagcgggtagattttagtgaagaa
aaagaggacaaaggttatattactttagaagtaaataaagaacaagttaattggcaattt
aatccacttcctagccgcaatttttgttctattaatattaatgtttctgaggaatctgac
cctcaatctgttatccttaaagccattcaaaaaaagtttatacaaaattcagtagtacgc
ttgatttacaaaattcgttctgaacaattagaattaattaatacaggggagatttataaa
gcattagaagagtcccacagttatactattagaccggaattagttagtcaattatcccgt
tctcgtttaccagaattaggggtaggaaataatttagatcctatatctgctttacaagct
tatttagatagcaaagaagatctcaaagatatcgttaaagatatgttagaaactgctgaa
attttactgaataatgacgatccgaacttagatatatccgttaaacaggaaattttacca
ttaaaagatttataa
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