Cyanobacterium endosymbiont of Rhopalodia gibberula: RGRSB_0712
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Entry
RGRSB_0712 CDS
T05747
Symbol
rnb
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
cer
Cyanobacterium endosymbiont of Rhopalodia gibberula
Brite
KEGG Orthology (KO) [BR:
cer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cer03016
]
RGRSB_0712 (rnb)
Enzymes [BR:
cer01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RGRSB_0712 (rnb)
Transfer RNA biogenesis [BR:
cer03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
RGRSB_0712 (rnb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
CSD_RNase_II
RNase_II_C_S1
HetR_C
Motif
Other DBs
NCBI-ProteinID:
BBA79255
UniProt:
A0A2Z5TIM9
LinkDB
All DBs
Position
1102310..1104352
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AA seq
680 aa
AA seq
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MLIIKAAKRVEKGKLIEFRVQGERRIAVVDRPEGKKDWIVIDVEGQSHKIRPQRVEYEIN
GSSYTIKDIPQFLQEVETYLDPSSLEVAWELLVENGQSVTSSEMAQLLFSETSPAHCYAA
HSLLCDDKTYFKKKGDSYEPRTSGQVEEIKHQLEVERQRQQEKEVFFTNIEKALAGQKID
WTESDRNRLELLERLVLQPEQANRNSQEILDEIGRSPTPEAAFELLVELGWWSRNENLFL
RRSSYPIQFSRKVLDVVQFYLENPPPDRDSDRLDLTHLKVYTIDDESTEEIDDGLSVEFL
GDDQIKLWIHIADPTRLVTPGDELDLEARRRSTTLYLPTGMISMFPIELATGPMSLRQGK
ICPALSFGVILDDKGAVLDYSIHASLIKPTYRLTYHDVDEMFHLAIKAEPEIPILADASK
QRHRWRKSQGSITIKMPEAVIKVKSEDDIVIELIDSSRARQLVAEMMILAGEVAGRYCQE
HGLPVPFRGQPQPELPPEEELLLLPPGPVRACALRRCMPRSEIGTLPNRHASLGLDTYTQ
VTSPIRRYTDLLTHFQIKAHLRGDPFPFPLDVMQQIIYSVTLSAQEATLVERQTNRYWGL
EFLRRNADQIWQGVVLRWLREDENLGILLLEELGLELPHRFERAVSLGDRLLVKVSRSDP
HRDEIRFREMPEHEVQSSMI
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgttaataatcaaggcagcaaagcgggtggaaaaaggaaagctcattgaatttagggta
caaggggaacgtcgtattgcagtcgttgatcgcccagaaggaaaaaaagattggatagtc
attgatgttgaaggtcaatctcataaaattcgacctcaacgggtggaatacgagataaat
ggaagttcctacacaattaaagatataccccagtttttgcaagaagttgaaacctacctt
gacccctctagtttagaagtggcttgggagttactagtggaaaatgggcagagtgtaact
tcttctgaaatggcgcaattgctgttttctgaaacttctccagctcactgttatgcagct
cacagtttattatgtgacgataaaacttactttaagaaaaaaggagatagttacgagccg
agaaccagtggtcaagttgaagaaattaaacaccaactagaggttgaacggcaacgtcag
caagaaaaagaagtgttctttactaacatagaaaaagctctagcaggacagaagattgat
tggacagaaagcgatcgtaatcgtttggaattattggaacgcttagttttacagccagaa
caagctaatcgtaattctcaagaaatcttggatgaaattggacgatctcctactccggaa
gcggcttttgagttgttagtagaattaggatggtggagtcgcaacgaaaatctatttttg
cggcgtagttcttatccaattcaattttctagaaaggtacttgatgtggtgcaattctat
ttagaaaaccctccccctgatcgagatagtgatcgccttgatctaacccatcttaaagtg
tataccatcgatgatgaaagtactgaagaaattgacgatgggttgagtgtggaattctta
ggggatgatcaaatcaaactttggattcatatcgctgatccaactcgtctagtgactcca
ggagacgaattagatttggaagcgcgaagacgaagtaccactctctatttacctacgggc
atgatttccatgtttccgatagaattggcaactggaccaatgagtttacgccagggtaaa
atctgtcctgccttgagttttggcgtaattttagatgataaaggggcggttcttgattat
tcaattcacgctagtttaattaaaccaacctatcgcctcacgtatcatgatgtagatgag
atgtttcacttagccatcaaagctgaaccagagatacctatcctagctgacgcttctaag
cagcgacaccgatggcggaagtctcaaggatcaattactatcaagatgccagaggcagtc
attaaagttaaatccgaagatgacattgtaatcgaattgattgatagttccagagcaaga
caattagtggcagaaatgatgattttggctggggaagtagctggacgttattgtcaagaa
cacggtttaccagttccgtttaggggacaacctcaaccagaattacccccagaagaagaa
ttgctcttattacctccaggacctgtgagggcttgtgctttacgtcgttgtatgcctcgt
agtgagattggaactttacctaatagacatgcaagtctaggtttagatacttatactcaa
gtaacctcacccattcgccgttatacagatttgttaactcattttcaaattaaggcacat
ttacgcggcgatccttttccattccctcttgatgttatgcaacagattatttatagtgtg
actttatcagcccaagaggcgacgttggtagaacgacaaactaatcgttattggggatta
gagtttttgcggcgtaatgctgatcaaatttggcaaggagtggtcttgcgttggttgcgc
gaagatgaaaatttaggaatcttgttactcgaagaattaggattggaattacctcaccgt
tttgaaagagctgtgtctttgggagatcgtttgttggttaaggttagtcgttctgatcct
catcgtgatgagattcgctttcgagagatgcccgaacatgaagtccaatcaagcatgatt
taa
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