Cyanobacterium endosymbiont of Rhopalodia gibberula: RGRSB_0842
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Entry
RGRSB_0842 CDS
T05747
Symbol
sigD
Name
(GenBank) RNA polymerase sigma factor SigD
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
cer
Cyanobacterium endosymbiont of Rhopalodia gibberula
Brite
KEGG Orthology (KO) [BR:
cer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cer03021
]
RGRSB_0842 (sigD)
Transcription machinery [BR:
cer03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RGRSB_0842 (sigD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
HTH_10
HTH_24
DUF4143
HTH_11
HTH_Mga
HTH_71
HU-HIG
HTH_5
MerR_1
HTH_53
IF2_N
DUF3791
MerR
Motif
Other DBs
NCBI-ProteinID:
BBA79369
UniProt:
A0A2Z5SWX5
LinkDB
All DBs
Position
complement(1308350..1309306)
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AA seq
318 aa
AA seq
DB search
MKISTTSPDPVRAYLREIGRVPLLTHEEEILYAKRVQRLVNLENIQESLTEELGQEPTMA
QWAKTARITQKELRSVIATGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGM
QRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQ
EKGRAATIQELAEELELTPKQVREYLERARQPLSLDLRVGDNQDTELGDLLEDTGPSPED
YATYSSLQLDLDKLMEDLTPQQKEVLALRFGLADGKPLTLAKIGTILNISRERVRQIERE
ALAKLRKLKANIREYLAS
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatttccacaacttctcctgatcctgttcgtgcttacctaagagaaattggtcgt
gttcctttactaactcatgaggaagaaatcctttatgctaagcgagtacagcgattggtt
aacctagaaaacatacaagaatctttgactgaagaactgggacaagaaccaaccatggct
cagtgggcgaaaactgctaggatcactcagaaggaacttcgctcagttattgctactgga
gaagcagctaagcgtaaaatggttgaggctaatcttcgcttagtcgtatcagtggctaaa
aaataccttaagcgcaatttagatctccttgatttgattcaagaaggaaccattgggatg
caacgtggggtagagaaatttgatcctactaaagggtatcgtttttcaacctatgcttat
tggtggattcgtcaagctattacccgtgcaatcgctgaaaaaagtcgtactattcgttta
ccgattcacataaccgaaaaactcaataaaattaagaaagcacaacggcaacttgcccag
gaaaaaggccgtgccgcgactattcaagaactagctgaagaactagagttaacccccaaa
caggttcgggaatacctggaacgcgctcgtcaacccctctctttggatctgcgggtaggg
gataaccaagatactgaattaggagacttattagaggataccggaccttctcctgaagat
tatgcaacctattcctcgttacagttagatctcgacaaactaatggaagatctaacacca
caacaaaaggaggtattagctttaagatttggacttgctgatggcaagcctctgacgttg
gctaagattggcactatcctcaatatcagtcgtgaacgggttagacaaattgaacgagaa
gccttagcaaaactccgaaaacttaaggctaatattagagaatacttggctagctaa
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