Cyanobacterium endosymbiont of Rhopalodia gibberula: RGRSB_0999
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Entry
RGRSB_0999 CDS
T05747
Symbol
topA1
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
cer
Cyanobacterium endosymbiont of Rhopalodia gibberula
Brite
KEGG Orthology (KO) [BR:
cer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cer03032
]
RGRSB_0999 (topA1)
03400 DNA repair and recombination proteins [BR:
cer03400
]
RGRSB_0999 (topA1)
Enzymes [BR:
cer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
RGRSB_0999 (topA1)
DNA replication proteins [BR:
cer03032
]
Prokaryotic type
DNA Topoisomerases
RGRSB_0999 (topA1)
DNA repair and recombination proteins [BR:
cer03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RGRSB_0999 (topA1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
BBA79502
UniProt:
A0A2Z5SWX2
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All DBs
Position
1563546..1566197
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AA seq
883 aa
AA seq
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MPTLVIVESPTKARTIRNYLPKGYRVEASMGHVRDLPASAEEVPASYKEKSWSNLGINIE
NDFEPLYVVPKGKKKVVQELKFALKEADELILATDEDREGESISWHLLQLLKPKVPIKRM
VFHEITREAIQQALKNCRDIDKNLVHAQETRRILDRLVGYTVSPLLWKKIARGLSAGRVQ
SVAVRLLVQRERERQAFQSGGYWNLKALLETEDKNSFSAKLVTLKNKKIATANDFDPSTG
KITQGRNVVLLDEHQAYTLKNRLDRKHWNVSNIEEKPTTRKPAPPFTTSTLQQESNRKLG
ISARDTMRIAQKLYEEGYITYMRTDSVHLSDQAITAARNCVEQKYGKEYLSPKPRQYTTK
SKGAQEAHEAIRPAGNEFRTPQETGLSGNEFSLYDLIWKRTVACQMANASLTKIVISLEV
EDAGFRSSGKRIDFPGFFRAYVEGSDDPEAALENQEIILPSLQVGDHPTCQQLDVLDHET
QPPTRFTEASLVKILETEGVGRPSTYASIIGTIIDRGYAQMRSKALVPTFTAFAVVSLLE
QHFHDLVDTKFTSKMEHTLDEIATGETQWVPYLKDFYLGEKGLDNLVQLGIENIDPAIAK
AVNLDKLEVTVKLGKFGPYIEVIQEEEVITASIPMDLTPADLNPERVSTILKQKIEGPKE
LGLHPETGESIYALIGSYGPYVQLGEVSEDNKKPKRTSLPKDMKPEDVTLEKAVGLLSLP
RLLGNHPDTGAKIKAGLGRFGPYIVHDQGKEGKDYRSLKAEDDVLTINLERAVELLAQPK
RTRRGSRGDKKPLRELGIHPEDKEVINLYEGPYGLYVKHGKVNASLPEGETVDTLTLEIA
LELLATKATTKKKITSKSTQSKTTTKSKTTRKNAKSTADSNNK
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atgccaacgcttgttatcgtcgaatctccgactaaagctcgtaccattagaaactatcta
cccaaagggtatcgcgtcgaagcatctatgggtcatgtacgagatctacctgcctcagct
gaggaagttcccgcatcatataaggagaaaagttggtcaaacttaggaattaatattgag
aatgattttgagccactttatgtcgttcccaaaggtaagaaaaaagtggttcaagaactc
aaatttgctttaaaagaggcggatgagttaattcttgctactgacgaagaccgtgaaggg
gagagtattagttggcatttgctgcagctactcaaacccaaagttcctatcaagcgtatg
gtattccatgaaattacccgcgaagccatccaacaagcgttgaagaattgtcgtgatatt
gataaaaatttggttcatgctcaggaaacaagacgaattttagatcgtttagtgggttat
acggtttctccgttgctttggaaaaaaattgctcgcggcctttccgctggacgagtgcaa
tcagtagcagttcgtctattagtacaacgagaacgagaacgtcaagctttccaatcggga
ggatactggaatctcaaagctttattagaaacagaagataagaactccttcagtgctaaa
ttagtgactctgaagaacaagaaaattgctacagctaacgattttgaccccagtactgga
aaaatcactcaaggacggaatgtagttcttcttgatgaacatcaagcctatactcttaaa
aatcgcttagacaggaaacattggaatgtcagcaatatagaggaaaaacccacaacccgc
aaacccgctcctccttttactacttctactttacaacaagaatctaaccgaaaattagga
atttcagcgcgggatacgatgcggattgcccaaaaactttatgaagaagggtatatcacc
tatatgaggacagattctgtccatttatctgatcaggccattactgctgcgagaaactgt
gttgagcaaaaatatggcaaagaataccttagccccaaacctcgtcaatacacaacaaaa
agtaagggagcccaagaagcacacgaagccattcgtccagcaggaaatgagtttcgcact
ccccaagaaacaggattatcaggtaatgagttttccctctatgacttaatttggaaacgt
actgtagcttgtcaaatggctaatgctagtttaaccaaaattgttattagtcttgaggta
gaagatgcaggctttcgttcttcaggtaaaaggattgatttccccggttttttccgagct
tatgtcgaaggatctgatgatcctgaagcagctttagaaaaccaagaaataattcttcca
tccctacaagtaggagatcatcctacttgtcagcaattagacgtgttagatcatgaaacc
caacctcctactcgatttaccgaagcatctcttgtgaaaattcttgaaactgagggagtt
ggtcgtccgagtacctacgccagtattatcgggacaattattgatcgtggttacgctcaa
atgcgcagtaaagccttagtcccaacgtttaccgcttttgcagtggtgagtctattagag
caacatttccatgatttggtagatacaaaattcacctcaaaaatggaacacaccctcgac
gaaattgccactggagaaactcaatgggttccctatcttaaggatttttatctcggggaa
aaggggttagacaatctggttcaattaggtattgagaacatagatcctgcaatagccaaa
gccgtcaacctagacaaattagaggttactgttaaacttggaaagtttggaccgtatatt
gaggtgatacaggaagaagaagtgattaccgcttcaattcccatggatttaactcctgct
gatcttaatcctgaacgggtatctacaattcttaagcaaaaaatagaaggacccaaagaa
ttggggttacaccctgaaacaggagaatctatctatgctcttatcggtagttatggtccc
tacgttcaattgggagaagtcagtgaggataataagaagcccaaacgcacctctttacct
aaagacatgaaacctgaagatgtcactctagagaaagctgtggggttgttatctctccct
cgtttgttaggaaatcatcctgacacgggagctaaaatcaaagctggtttagggcgtttt
ggtccttatatagttcacgatcagggtaaagaaggtaaagattatcgttccctaaaagcg
gaggatgatgtcttgacgattaacctagaacgagctgtagaattattagcccaaccaaaa
cgaaccagaagaggaagtcgaggggacaagaaaccgttacgagaattagggattcatcct
gaagacaaagaagtcattaacctttatgaaggtccctatggcctctatgttaaacatggc
aaggttaatgctagtcttcccgaaggagaaacagttgatactttaactctagaaatagcg
ttggaattgttagccacaaaagcgacaacaaagaaaaagataaccagcaaatcaacacaa
agtaaaacaacaaccaaaagcaaaactactcgtaaaaatgcaaaatcaacagccgatagt
aacaataagtga
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