Cyanobacterium endosymbiont of Rhopalodia gibberula: RGRSB_1106
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Entry
RGRSB_1106 CDS
T05747
Name
(GenBank) putative exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
cer
Cyanobacterium endosymbiont of Rhopalodia gibberula
Brite
KEGG Orthology (KO) [BR:
cer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cer03400
]
RGRSB_1106
DNA repair and recombination proteins [BR:
cer03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
RGRSB_1106
Archaeal homologous recombinant proteins
RGRSB_1106
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_15
SbcC_Walker_B
SMC_N
Rad50_zn_hook
AAA_29
AAA_21
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
BBA79591
UniProt:
A0A2Z5SZB8
LinkDB
All DBs
Position
complement(1734814..1737840)
Genome browser
AA seq
1008 aa
AA seq
DB search
MIPLELTLKNFLSYREATLDFRGLHTACVCGANGAGKSSLLEAITWVIWGKSRALVDDDV
IYTGCDYVRVDFQFISNQEVYRIIRNRHRGRSSHLEFQIESLGEFRSLTSKGTRATQEKV
VSSLKLDYETFINSAYLRQGRADEFMLRRPTERKQILADLLKLEQYQELSNRAKDLSKQC
QGQAQQIEFSLVSIKEKLEKKKDIQEQQEILAEQIQKLKLNQEQQKIKLGQLQGEEQQRK
TWSNQLDWQEQQYNKLVKDEQRLQKEKDEINQHLHRIIITTNQEDNIIKGCQQLSELQKK
EKSLSLKFEVHQDKTKRQQLLTQKLNKEHNVIELQIHQAQTQLDILEQQEKELQHILKNS
DEVKTTLQHLFNRRRYLYELDKLQHKVAPIQQRYYNLQSEIEQVKANLKAQLEQLYIAET
ECLKQVDKIPKIRKYISEIDTNIQNLNNKKVYKKRVEEKGQKQREYQERLRENHRIFKEK
IEELKQKLQKLNIPNSTCPLCEQTLNETHLNHVISKTQLQEQEIKDKIWMLQEQMSLVEK
ELKTLREEYTKLNKDLTAYPLLQKKFGQLEAQLETIEAVNFKLKQVRKKIQEIEQKLTQN
SYAVDLQSELNTLNKELKHLNYDEQTHALVRGEVEQLRKAEIIQAKLEEANHRQSIISQQ
KPQLIKKISALKQEIKDLHQTSKIKQEIKEIEQLIQNLGYKNSDHQKLLKSLRESHFWEL
KFQELQQAKQQYPQLQKRLEIVEIRLNDNLTEQKKIKQEIDVLSFKIKHTADQREVIAFL
EKSIQSQRQKLDELLANRGRLEQSISQLESVKQQFTDDKKQLKDIYRKYRVYTELAKAFG
KNGIQALMIENILPQLEAETNQILARLTDNQLHIQFFTQRKGRSGSSRKKTTKVIDTLDI
LISDYQGTRSYETYSGGEAFRINFSIRLALAKLLAQQAGTSLQMLIIDEGFGTQDAQGCE
QLIAAINAIASEFSCILSVTHMPRFKEAFQCRIEVYKDNQGSKLKLVS
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atgattcccctcgaactcactctgaaaaactttcttagctatcgagaagcaactctagac
tttcgagggttacatacagcctgtgtctgtggtgcaaatggtgcaggaaaatcatcttta
ctcgaagcaattacctgggtgatttggggtaaaagtcgcgccttagttgatgatgatgtt
atttatacaggatgtgactatgtgcgagttgattttcaatttattagtaatcaagaagtt
tatcgaatcatccgtaatcgtcatcgaggacgtagtagtcatctagaatttcaaatagaa
agtttaggagaatttcgttcattgactagcaaaggaacacgagctactcaagaaaaagta
gtttcctccttaaaactggattatgaaacgtttattaattcagcatatttacgtcaagga
agagctgatgaatttatgctacgtcgcccaacagaacggaaacagatattagcagactta
ttaaagcttgaacagtatcaagaattatctaatcgagcgaaggatttatctaaacaatgt
caaggacaagctcaacaaattgaatttagtctagtatctataaaagaaaaactagaaaag
aaaaaagatattcaagaacaacaagaaattctagcagaacagatacaaaaacttaaactt
aatcaagaacaacaaaaaattaagctcgggcaacttcaaggagaagaacagcagagaaaa
acttggtctaaccaactagattggcaagaacaacaatacaataaactagtcaaagacgaa
caaagattgcaaaaggaaaaggatgaaattaatcaacatctacatcgtatcataataact
accaaccaagaagataatattattaaaggttgccagcagttatcagaattacaaaagaaa
gaaaaaagcttatctcttaagtttgaagttcatcaagataaaactaaaagacaacaatta
ttaacccaaaaacttaataaagaacataatgtaattgagttacaaattcatcaagctcaa
actcaattagatatattggaacaacaggaaaaagaactgcagcatattctgaagaattct
gatgaagttaaaactactttgcaacacctattcaatcgtcgtagatatctatatgaatta
gataagttacagcataaagttgcaccaattcaacaaagatactataatttacaatctgaa
attgaacaagttaaagctaatttaaaggctcagctagaacagctttatattgctgaaact
gagtgtttaaaacaagtggataaaatccccaaaatacgaaaatatatatcagaaattgat
actaatatacaaaatcttaataacaaaaaagtttataaaaaacgagtggaagaaaaaggt
caaaaacaaagagagtatcaagaaaggctcagagaaaatcatcgaatttttaaagaaaaa
attgaagaactaaagcaaaaattgcaaaaactaaacatcccaaattcgacttgtcctcta
tgtgaacagacattaaatgaaactcatcttaatcatgtcattagtaaaactcaattgcag
gaacaggaaatcaaagataaaatttggatgttacaagaacagatgtcccttgtagaaaaa
gaattaaaaacactacgagaagaatatactaaattaaacaaagacttaactgcttatcct
ttattacagaaaaagtttggacaattagaagcacaactagaaactattgaagcagtcaat
tttaaactcaaacaagttagaaaaaaaattcaagaaatcgaacaaaaattgacccaaaat
agctatgctgtagatttacaatctgaacttaatactctaaataaagaattaaaacatctc
aattatgacgagcaaacccatgctctagttagaggagaagtcgaacaattacgtaaagca
gaaattatacaagctaaactagaagaagcgaatcaccgtcagtcaattatttcacaacaa
aaacctcaacttattaaaaaaatatctgctcttaaacaagaaatcaaagacttgcatcaa
acctcaaagattaaacaagaaattaaggaaatagaacaattaattcaaaatttaggctat
aaaaattcggatcaccagaaattactaaagtctcttcgcgagtcccatttttgggaatta
aaatttcaagaattgcaacaagcaaaacaacaatatccccaattacaaaaacggttagaa
attgtagaaatacgattaaatgataacctgactgaacaaaagaaaattaaacaagaaatt
gatgtcttatcttttaagataaaacacacagcagatcaaagagaagtaattgctttttta
gaaaaaagtattcaaagtcaacgacaaaaattagatgagttattagcaaaccgaggaaga
ttagaacaatctatttctcaattagaaagcgttaaacaacaatttactgatgataaaaaa
caacttaaagatatctatagaaaatatcgtgtttatacagaattagctaaagcttttggg
aaaaacgggatccaggcattaatgattgaaaatattttacctcaattagaagctgaaact
aatcaaattcttgctcgattaacagataatcaactccatattcaattctttactcaaaga
aaaggacgtagtggcagttctcgaaagaaaactacaaaagttattgatactttagatatt
ttaatttctgattatcaaggaactcgttcatatgaaacttattcaggtggggaggcattt
agaattaatttttctattcgtttagctttggcaaaattactagcacaacaggcaggaact
tctctacaaatgcttatcattgatgaaggatttggaacccaggatgctcaaggttgtgag
caattaattgcagcaattaatgccatcgcttcagagttttcttgtattttaagtgttact
catatgccacgatttaaagaggcttttcaatgtcgtattgaagtatataaagacaatcag
ggatctaaattaaagttagttagttaa
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