Cyanobacterium endosymbiont of Rhopalodia gibberula: RGRSB_1158
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Entry
RGRSB_1158 CDS
T05747
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
cer
Cyanobacterium endosymbiont of Rhopalodia gibberula
Brite
KEGG Orthology (KO) [BR:
cer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cer03016
]
RGRSB_1158 (truB)
Enzymes [BR:
cer01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
RGRSB_1158 (truB)
Transfer RNA biogenesis [BR:
cer03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
RGRSB_1158 (truB)
Prokaryotic type
RGRSB_1158 (truB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB-C_2
TruB_C_2
Methyltransf_11
Methyltransf_25
Chorion_3
Motif
Other DBs
NCBI-ProteinID:
BBA79634
LinkDB
All DBs
Position
complement(1806710..1807606)
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AA seq
298 aa
AA seq
DB search
MFGFIALNKPSEITSHDCVARVRKILKLRKVGHGGTLDPLATGVLPIAVGKATRLLQFLP
ENKTYRALIRLGVQTTTDDLQGEVVKSQSASMLTLEQVEPLLNQFIGTIQQTPPIYSAIQ
RDGKRLYSLARQGKTVDIAAKKVYIKQINLVGWYTGEFPELEVDIACGPGTYIRAIARDL
GTMLNLGGTLASLTRTESCGMKLSESITLGQLKTEIEQGSFSLISSNVALQHLNQILLSE
TDGKRWLQGQKIVQDLLPLSVAGVVRVYQQKDKLLGIGNLVKFNNYQVLSPKVVILNE
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
atgtttggatttatcgccttaaataaaccctcagaaattacgtctcatgactgtgtagcc
agagttagaaagattcttaaactcagaaaagttggtcacggtggaaccttggatccttta
gcaacgggagttctacctattgctgtggggaaagccactcgtttgttacaatttcttccc
gaaaataaaacttaccgtgccctgattcgcctgggagtgcagacgaccactgatgacctc
caaggggaagtcgttaagtctcaatccgcttctatgttaactttagaacaagtcgaacct
ctactgaatcagttcattggaactattcaacagactccccctatttatagtgctattcaa
cgtgatggtaaacggttatacagtttagcaagacaaggaaaaacggtagatattgcggca
aaaaaagtttatattaagcaaataaacttagttggttggtatactggggagtttcccgaa
ttagaagttgatattgcttgtggtccggggacttatattcgagcaatcgcccgcgatttg
ggaactatgcttaatttggggggaactttggccagtttaactcgtactgaaagttgtggt
atgaagttatccgaaagtattactttaggacaactaaaaacagagattgaacagggaagt
tttagcttaatttcctcaaatgttgccctacaacatttaaatcaaatacttttatcagaa
actgacggaaaacgttggcttcaaggacaaaaaattgttcaagatttactgccattatct
gttgccggagttgttagagtatatcaacaaaaagataagttattaggcataggaaattta
gtaaaatttaataattatcaggtcttgagtcctaaagttgtcattttaaatgaataa
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