Cyanobacterium endosymbiont of Rhopalodia gibberula: RGRSB_1371
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Entry
RGRSB_1371 CDS
T05747
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cer
Cyanobacterium endosymbiont of Rhopalodia gibberula
Pathway
cer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RGRSB_1371 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cer03019
]
RGRSB_1371 (deaD)
03009 Ribosome biogenesis [BR:
cer03009
]
RGRSB_1371 (deaD)
Enzymes [BR:
cer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RGRSB_1371 (deaD)
Messenger RNA biogenesis [BR:
cer03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RGRSB_1371 (deaD)
Ribosome biogenesis [BR:
cer03009
]
Prokaryotic type
rRNA helicases
RGRSB_1371 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
HEM4
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
BBA79812
UniProt:
A0A2Z5SXT8
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All DBs
Position
2148985..2150427
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AA seq
480 aa
AA seq
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MTISFNSLGLSDDRVNKLETLGFTSPTEIQSKAIPLILEGHDILGQSQTGTGKTAAYSLP
IMEQIDTNDSNIQALVLTPTRELAQQVALALKDFSTERRLYILTVYGGQSIDRQIRSLQR
GVQIVVGTPGRVIDLLERKKLVLDNLKWAVLDEADEMLSMGFIDDVKKILKQTPDQRNTA
CFSATMPREIRELVNQFLKSPVTVTIDQPQAAPDKIEQHLYGVPRGWSKLKALQPILEIE
TPETAIVFVRTKQTASELTSKLQEAGQSVDEYHGNLSQSQRERLVHRFRDGKIRIVVATD
IAARGLDVENLSHVINYDLPDNAETYIHRIGRTGRAGKKGTAISLVEPIDRRMVRQIERR
IRQRIELCSIPNRSQVEAKRLEKLQKQIQDSLAGERMASFLPIVRELSDEYDPQAIAAAA
LQMVYDQDCPNWMKTDWEVPEAGISKPIIQGKNRKDNSKPRRNNSGKKLDRKTVSHHRGR
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgaccatttcttttaatagcttaggactctctgatgaccgtgttaataaactagaaacc
ctaggttttacgagtccaacagagattcaatctaaagcaattcctttaattttggaagga
catgacattctaggacaatctcagacaggaacagggaagacggcagcttactccttgccc
attatggagcagattgatacaaacgattccaacatacaggcacttgttctaactccaacc
cgtgaacttgctcaacaggttgcccttgcccttaaggacttttccactgaacgccgactg
tacattttgactgtttatggaggtcaatcgattgacaggcaaattcggagtttacaacga
ggtgtccaaattgttgttggaactccaggaagggttatcgacctattagagcgcaaaaag
ttggttctagataatttaaaatgggccgttctcgatgaagctgatgaaatgctcagtatg
ggttttatcgacgatgtgaagaaaattctaaagcaaacccctgaccaacgcaacactgct
tgtttctcagcaactatgccccgtgaaatccgagaattagttaaccagttcctcaaatca
cctgttacagtgactatagaccagcctcaagctgcacctgataaaattgaacaacatctt
tatggtgttcctcgcggttggtcaaaactcaaggcgttacaaccaattttagaaattgaa
acccctgaaacagccattgtttttgttcggactaaacagacggcttctgaacttaccagc
aagttacaagaagccgggcaaagtgttgatgaataccatggcaatctaagtcagtcccaa
cgagaacggttagtccatcgatttcgagatggtaaaattaggattgttgtggccacagat
attgcggcaagagggttagacgttgagaacttaagccacgtcattaactacgatttgccg
gataatgcagaaacttatattcatcggatcggacgaacaggccgggcaggaaaaaaaggg
acagcaatatctttagtggaaccaattgaccgccgcatggtacgtcagattgaacgacga
attcgacagagaatagaattgtgtagtattcctaatcgctctcaagtggaagctaagcga
ctggaaaaactacaaaagcaaattcaagattccttggcaggagaacggatggcttcgttt
ttacctattgtgcgggaacttagcgacgaatatgatccccaagcaatagctgctgcggct
ttacagatggtttatgatcaagattgccccaattggatgaagactgattgggaagtccct
gaagcaggaatatctaaaccaattattcagggtaaaaatcgcaaagataattccaaaccc
cgtcgtaataactcaggaaaaaaattagatcgtaagacagtcagtcatcatagagggcgt
tag
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