Cyanobacterium endosymbiont of Rhopalodia gibberula: RGRSB_1503
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Entry
RGRSB_1503 CDS
T05747
Symbol
pcrA
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cer
Cyanobacterium endosymbiont of Rhopalodia gibberula
Pathway
cer03420
Nucleotide excision repair
cer03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cer00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RGRSB_1503 (pcrA)
03430 Mismatch repair
RGRSB_1503 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cer03400
]
RGRSB_1503 (pcrA)
Enzymes [BR:
cer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RGRSB_1503 (pcrA)
DNA repair and recombination proteins [BR:
cer03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RGRSB_1503 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
RGRSB_1503 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
PcrA_UvrD_tudor
DEAD
AAA_30
DnaB_C
AAA_11
CarD_TRCF_RID
DUF3553
Motif
Other DBs
NCBI-ProteinID:
BBA79922
UniProt:
A0A2Z5SY28
LinkDB
All DBs
Position
2355663..2357993
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AA seq
776 aa
AA seq
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MTVNNDFLAQLNTSQRLAVEHFCGPLLVAAGAGSGKTRALTCRIAHLISHHHVEPDSILA
VTFTNKAARAMKERIERLFAQEMAIKNHRQRFDLLSEYEQKKLVSRVYKTTTKRLWIGTF
HSLCAKILRFDINKYKDERGRQWQRNFSIFDESDVQSLIKNIVTKQLNLDDKKFDPRSVR
YQISNLKNLGLSPEKYLKQDSSYKNRVIAEVYNEYQLQLATNNALDFDDLILVPVRLFQQ
NESILGYWHNQFKHILVDEYQDTNQIQYELISLLTTNGETRKSEWNWQNRSIFVVGDADQ
SIYSFRMADFTILLNFQSDFGDGLPDEDTRTMVKLEENYRSRENILQAANYLIENNTQRI
DKILKATRGLGEYIYCYKADNEQIESKIVIDKIQNLVKETPELNWGDFAILYRINAQSRP
FEDCLIYNNIPYKIVGGFKFYDRQEIKDALAYLRLIANPADTVSLLRIINTPRRGIGKTS
IESLVKAAQELEIPLWEIISDTTSVNTLAGRAARSINNFSKMIKYFQEKITSLSGAEILN
QIMEVSGYIDNLKEKGTEEADNRLENISELYNAILQFQEDAEDINLQGFLSNVSLSSDFD
DLKEEEKKVSLMTLHSAKGLEFPVVFLVGLEQGLLPHIRSLNDPLSLEEERRLCYVGLTR
AQEQLFLTYARERFVWGSKETKIPSQFLKELPSDLIKNDLPKTLKSYHQSNISQSKTFQI
YNQQWSVGDRLIHPNFGIGEVTHILGSRKKMNLAVKFSGFGQKIINPRVTLIEKID
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgactgttaataatgactttcttgctcaacttaatacctcacaacgtctagctgttgaa
cacttttgcggacctttattggtggcagctggtgctggttcaggcaaaactagagccctc
acttgtagaattgctcatctgattagtcatcatcatgttgaaccagactctattctagct
gttacctttacgaataaagcagctagagcaatgaaagaacgaattgagagattatttgcc
caggaaatggctattaaaaatcatagacaacggtttgatcttctctctgaatatgaacaa
aaaaaacttgtgtcacgagtttacaaaacaactactaaaaggctttggattggaactttt
catagtttatgtgcaaaaattttacgttttgacatcaataaatataaagatgaacgggga
cgacaatggcagcgaaatttttcaatttttgatgaatcagatgtacaaagtttaatcaaa
aatattgtaactaagcaattaaatttggatgataaaaaatttgatcctcgctcagttcgc
tatcagattagtaacctgaaaaatttaggattatctcctgaaaaatatcttaaacaagac
tcttcctataaaaatcgtgttattgctgaagtttataatgagtatcaattacaattagca
acgaataacgccttggactttgatgatttaatcctagttcccgttagactatttcaacaa
aatgagtctattcttggctattggcataaccaatttaaacatattttagttgatgaatat
caagatactaatcaaattcaatatgaattaattagtttattaacaactaatggagaaact
agaaaaagtgaatggaattggcaaaatcgctctatttttgttgtaggtgatgctgatcaa
tctatttatagttttcgcatggcagactttaccattctgttaaattttcaatcagatttt
ggagatggtttgcccgatgaagatacccgtactatggttaaattagaagaaaattatcgt
tcaagagaaaatatcttacaagcagctaattatttaattgaaaataatactcaacgcatt
gataaaattttgaaggctacacggggactaggagaatatatttattgctacaaggcggat
aatgaacaaatagaatcaaaaatagtaattgataaaatacaaaacttagtaaaagaaacc
cctgaattaaattggggagattttgcgattctttatcgaattaatgctcaatctcgtcct
tttgaagattgcttaatttataataatattccttataaaattgtaggaggatttaaattt
tatgatcgccaagaaatcaaagatgctttggcttatttacgcctaattgctaatcctgca
gataccgttagtttactaaggattattaatacaccccgtcgaggaattggcaaaacttct
atagagtctttagttaaagcagcccaagaattagaaatccctctttgggaaattatttct
gatacgacttctgttaatactctagcaggaagagcagcaagatcaattaacaatttttct
aaaatgattaaatattttcaagaaaaaataactagcctatcaggggcagaaattttaaat
caaataatggaagtttctggctatattgataatttaaaagaaaaagggactgaagaagct
gataatcgcttagaaaatatttctgagttatataatgctattttacagtttcaagaagat
gcagaagacattaatttacagggatttttatctaatgtttccctctcgtctgattttgat
gatttaaaagaagaagaaaaaaaggtgtctttaatgactcttcattcagctaaaggattg
gaatttcctgtagtatttttagttggtttagaacaaggattattacctcatattcgtagt
ttgaacgatcctctatctttagaagaagaacgtcgtttgtgttatgttggattgactcgc
gctcaggaacaattatttttaacctatgctagagaacggtttgtttggggatcaaaagaa
actaaaattccatcgcaatttttaaaagagctaccttcagatttaatcaaaaatgatctt
ccaaaaactttaaaatcttatcatcaatccaacatatctcaatctaaaacttttcagata
tataatcaacaatggtcagtgggagatcgtctaattcatcccaattttggaatcggagaa
gttactcatattttaggatcaagaaaaaaaatgaacttagccgttaaattttcaggattt
ggacaaaaaatcattaatcctagagtgacgttgatagaaaagattgattaa
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