Cyanobacterium endosymbiont of Rhopalodia gibberula: RGRSB_1518
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Entry
RGRSB_1518 CDS
T05747
Symbol
lysA
Name
(GenBank) diaminopimelate decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
cer
Cyanobacterium endosymbiont of Rhopalodia gibberula
Pathway
cer00300
Lysine biosynthesis
cer00470
D-Amino acid metabolism
cer01100
Metabolic pathways
cer01110
Biosynthesis of secondary metabolites
cer01120
Microbial metabolism in diverse environments
cer01230
Biosynthesis of amino acids
Module
cer_M00527
Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
cer00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
RGRSB_1518 (lysA)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
RGRSB_1518 (lysA)
Enzymes [BR:
cer01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
RGRSB_1518 (lysA)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
AHD
Motif
Other DBs
NCBI-ProteinID:
BBA79935
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All DBs
Position
complement(2372999..2374423)
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AA seq
474 aa
AA seq
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MLSTEQRKSHSGRDYLEKETLEQGERSPNQSLFPLTANINNHNCLEIGGCDLKTLVKQFG
SPLYVLDEVTLRSACRQYREAFNRHYQGSSQVIYASKAWSCLAIASIVASEGLGFDVVSG
GELYTTLNALEKMGRTSEQIAQQIYFHGNNKSFAELELALEVNCTIVVDNWLELETLTKL
GNQNASMSIPILVRLAPGIECHTHEYIRTGHLDSKFGFDLCQLDAVFTYISQQSCLDCRG
LHAHIGSQIFEEQPHQDLGEVMVELLQKAQSYGLVLQELNIGGGLGIRYTEDDNPPSIEQ
WVEGVSRSVMKACDSYQLPYPKLIAEPGRSLVGSACVTGYTIGSRKEIPQLRTYIAVDGG
MSDNPRPITYQSLYCMVVANKILEPCTETVTIAGKHCESGDILIKNTQLPQTQPGDILVV
MGTGAYNYSMASNYNRLPRPAAVLVKDGEANLVIKRETHDDLIRQDRLPERLLS
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgttatcgacagaacaaaggaaaagccattcagggcgggactatttagagaaagaaact
ctagaacagggtgaacgatcaccaaatcagtcattgttccccctaactgccaatattaat
aatcataattgcttagaaattggcggttgcgatcttaagaccctagttaaacaatttggt
tctcctctttatgttcttgatgaagtaactctccgaagtgcctgtcgtcaatatagagaa
gcttttaaccgtcactatcaaggatcttctcaagtcatttatgcctccaaagcttggagt
tgtctagctattgccagtattgttgctagtgaagggttaggttttgatgttgtatcgggg
ggagaattgtatactaccctcaacgctttggagaagatgggacgtacctctgaacaaatt
gcccaacaaatttactttcatggcaataataagtcttttgcagaactagaattagctctt
gaggttaattgcactattgttgttgataattggcttgaattagaaactctaactaaacta
ggcaatcaaaatgcctccatgagtattcctatcctcgtacgcttagctccaggaattgaa
tgtcatacgcatgagtatattcgtacaggacatctagacagcaaatttggttttgatctc
tgccaactcgatgccgttttcacctatattagccagcaatcatgccttgattgccggggg
ttacatgcccatattggctctcaaattttcgaggaacaacctcatcaagacttaggagaa
gttatggtggagttgcttcaaaaagcgcaaagttatgggttagtcttgcaagaattaaat
attggcggaggtttgggcattcgctatacggaagatgataatccccccagcatagaacaa
tgggttgaaggagtgagccgctccgtaatgaaagcctgtgatagttatcaattaccctac
cctaaactcatcgctgaacctggacgttctttggtaggatcagcctgtgtcactggctat
actataggcagtcggaaagaaattcctcaactgcgaacctatatcgctgtagatggtgga
atgtctgataatcctcgtcccattacctaccaatcgctctattgtatggtggtagctaat
aaaatattagaaccctgcacggaaactgtcactatcgcgggcaaacattgtgagtctggg
gatattctgattaaaaatactcagttgcctcaaacccaaccaggggatattctggtagtg
atgggaacaggagcctataactatagtatggcttctaattacaatcgtctgcctagacca
gctgctgtcttagttaaagatggagaagctaatctagtgatcaaacgagaaacccatgat
gacctaattcgtcaagatcgcctccctgaaaggctactgtcttaa
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