Cyanobacterium endosymbiont of Rhopalodia gibberula: RGRSB_1574
Help
Entry
RGRSB_1574 CDS
T05747
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
cer
Cyanobacterium endosymbiont of Rhopalodia gibberula
Pathway
cer00300
Lysine biosynthesis
cer00470
D-Amino acid metabolism
cer01100
Metabolic pathways
cer01110
Biosynthesis of secondary metabolites
cer01120
Microbial metabolism in diverse environments
cer01230
Biosynthesis of amino acids
Module
cer_M00527
Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
cer00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
RGRSB_1574 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
RGRSB_1574 (dapF)
Enzymes [BR:
cer01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
RGRSB_1574 (dapF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DAP_epimerase
CntK_N
Motif
Other DBs
NCBI-ProteinID:
BBA79991
LinkDB
All DBs
Position
complement(2443547..2444386)
Genome browser
AA seq
279 aa
AA seq
DB search
MAIEFTKYHGLGNDFILIDNRLSNSPLVSPEQSVKMCDRHFGIGADGVIFALPGTGNTDY
TMRIFNPDGSEPQMCGNGIRCLARFIAQLEGEETLGKIYSINTPTGVIYPRLEAEGQVRV
EMGPPYLFAHEIPTTLGNPNEIVINQPLTVAGKLWLVTCVSMGNPHCVTFVEDVSAIDLA
VLGLQFEYHQMFPERINTEFIEVVRPDYLKMRVWERGAGATLACGTGACASVVAGVLTKN
CDRNSTVELPGGSLMIEWSEADNRLYMTGPAQLVFTGSY
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
atggctattgaatttactaagtatcatggattgggtaacgatttcattttgattgacaat
cgtttgagtaattcaccgttagtgtctccagagcagtccgttaaaatgtgtgatcgccat
tttggaatcggggcagatggggttatttttgctctcccaggaacaggcaatactgactac
accatgcgtatttttaatcctgatggttctgaaccacaaatgtgtggtaatgggattcgc
tgtctagctcgtttcattgctcagctagaaggggaagaaaccttaggaaaaatttattct
attaataccccaactggagtgatttaccctcgtttagaagctgaaggacaagtgagagta
gagatgggaccaccttatctatttgcccatgaaattcccaccactttaggaaatcctaac
gaaatagtgattaatcaacccctaactgtagccggaaaactctggttagtcacctgcgtg
agtatgggtaatccccactgtgttacttttgttgaagatgtatcagcgattgatttagct
gtcttgggacttcaattcgaataccatcagatgtttcctgagcgtatcaataccgaattt
attgaggtagttcgtcctgattatctgaaaatgcgggtttgggaaagaggtgcaggggct
accttagcctgcggaacgggggcctgtgcatccgtggtggctggggtattgaccaaaaac
tgtgatcgcaactctacagtagaactgccaggaggctctctgatgattgaatggtctgaa
gcggataatcgactctatatgacgggcccagctcaactggtgtttacgggaagctattaa
DBGET
integrated database retrieval system
