Chanodichthys erythropterus (predatory carp): 137002368
Help
Entry
137002368 CDS
T10334
Symbol
rc3h1b
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
cery Chanodichthys erythropterus (predatory carp)
Brite
KEGG Orthology (KO) [BR:
cery00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cery03000
]
137002368 (rc3h1b)
04121 Ubiquitin system [BR:
cery04121
]
137002368 (rc3h1b)
Transcription factors [BR:
cery03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
137002368 (rc3h1b)
Ubiquitin system [BR:
cery04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
137002368 (rc3h1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-C3HC4
zf-CCCH
zf-C3HC4_2
zf-CCCH_4
zf-CCCH_UNK
Prok-RING_4
zf_CCCH_4
FYVE
NS3_helicase_C
DUF2570
Baculo_IE-1
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
137002368
NCBI-ProteinID:
XP_067218037
LinkDB
All DBs
Position
16:19020487..19047343
Genome browser
AA seq
1112 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAINTD
IEQLPVNSALLQLVGGQVPKQQPVALITCPEDTKHYDEARQCVEELALYLKPLSSARGVG
LSNAAQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADTQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLAARVPCTPGLLPEEVVTLEPGRKASTL
TNGIVAGPGTSLPQLIARGTDPSTYDLLLKPKMDATSLSAPGSPPDSLDKSGLTLTPHPV
PHSRAEHLPMPKQVPVVHRGAPQMYSQQQTELFYPEPARPPASGSQYDTPYPAGNPYPYQ
PPQYVPPRYIRNPPPPGESAVPPYTEPYPGYGPESQYQGHHPGPPFSAHTYAPPPHYSRR
HGHYPTPPPPFAPPRDDLVRMSPVPLDVPPTAMPPPPSGAAGSLYHPQETSSRDRYPSDG
YYSAGPHHSQMRSHIRDPYSRSQPSLDDLHRRRKELLVQLEERKVISPPPFAASPTLPTH
PFPNDYPQEYLEDGSKAFGSREPDYAGQYSPWSCDTIGSYIGSKDAKPKDVSSAVEMMNA
EGKVLREPPLDTQRRSAEAKDDDPIIPFGPLPTVSPFGAISRTSKTGYQTTGPVQAMASS
QASGSKHMTMTDYPYGNHSGWGGSSYPQHQSINSQGHFSERLPMSAPDREQLKIELQQVN
QQISQQTRGMEAASNSMLLQREACALASQPTAGVKWSSGGTVSSEQLSLELHHVEREIGK
RTREIAMENQVAHEYKLKATENGQPDHKAQLEELSLALGEVSNGSSGMKPASSMGGSMLS
LSNKTSSLTLCSADQAASSSDLQKNGVVHSCS
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacagagtttttactgtgccccatatgcacccagacg
ttcgaggagacggtgcgccggcccatcagtctgggttgcggccacactgtttgcaagatg
tgcctcaacaagctgcaccgcaaggcctgtccctttgaccagacggccatcaacactgac
atcgagcagctgcccgtcaactcggccctgctacagctggtcgggggtcaggtgcccaaa
cagcaacctgtggcactcattacatgtccagaggacaccaagcattatgatgaggctcgg
cagtgcgttgaggagctggccctctacctcaaacccctcagcagtgcacgaggagtgggg
ttgagtaatgctgctcagagcatgctgagtcgccccatgcagaggaagctggtgactctg
gtgcactgtcagctggtagaagaggaaggacgggtcagagccatgcgggcggcccgctcg
ttgggtgaaagaactgttacggagctcattctacagcaccaaaacccccagcagctctcc
tccaacctgtgggctgctgtgagagctagaggttgccagttcctgggccctgccatgcag
gaggaggcactaaagctggtgctgttggccttggaagatggatctgctctttctaggaag
gttcttgtcctctttgtggtccagagacttgaaccaagatttcctcaggcctccaaaacc
agtattggacatgtagttcagctcctctaccgtgcctcctgtttcaaggtgactaagaga
gatgaggattcatcgctaatgcagttgaaagaggagttccgcacgtacgaggcacttcgg
agggaacatgactctcaaattgttcaaatcgcaatggagggagggctccgcatcgcccct
gatcagtggtcctctctgttgtatggagatcagtctcataagtcacacatgcagtccatc
attgacaagcttcagaccccagcgtcgtttgctcagagcgtgcaggagctgaccatcgca
ctgcagagaacgggtgaccctgccaatctcaaccggctaagacctcaccttgagttgctc
gctaacatcgaccccagtccagatgctcctcctcctacctgggagcagctagagaagggg
ctagtggcggtaaagacggtggtgcacggcctagttgacttcatccagaaccacagcaag
aagggtgccgacacgcagcagccaccccagcacagcaaatacaagacatacatgtgcaga
gacatgaagcaaaaaggaggctgtcccagaggagctagctgcacattcgcccactctcag
gaggagctggaaaagtaccgtaaaatgaacaaacgtcttgctgcgcgagtgccctgcacc
cctggtctgctgcctgaggaggtggtcactctggagcctgggcgaaaggcctctacactt
accaatggcattgtagctggtcctgggacgtctcttccccagctcatcgccagaggcaca
gacccctccacatatgacctcttactcaagcctaagatggatgccactagcctcagtgct
cctgggtctccacctgactctttggataaatctggcttgacactgacaccccaccctgtg
cctcactccagggcggagcacttacccatgcctaagcaggtgccagtcgtgcacagaggt
gcaccacagatgtattcgcaacagcagaccgagctcttctatccagagccagccagacct
cctgcctcaggatctcagtatgatactccatacccagcaggcaacccctacccttaccaa
cctccacagtatgttcctccccgctacatccgtaacccgcctcccccgggcgagtctgca
gtgccaccttacacagagccctacccaggttacggcccagaaagccaatatcagggccac
caccctggtcctcctttctcagcccacacctatgcaccgcccccccattacagtcgcagg
cacggacactatcccacacccccacctccgtttgcccctcccagagacgacttagtcagg
atgagcccggttcctttggacgttcccccgactgctatgcctccgcctccatcaggagca
gcaggttctctgtaccatccccaggagacatcatccagagacagatacccatcggatggg
tactattctgctggaccacaccatagccagatgaggtcccacataagagatccatacagc
cgctctcagcccagtctggatgacttgcatcgcagacgcaaggagctgcttgtccagctg
gaggagagaaaagtcatctcccctccccccttcgctgcctcccccactctccctacacac
ccgttccccaacgactaccctcaggagtatttggaggatggctctaaagcctttggaagt
cgggagccggactatgctgggcagtattccccctggtcatgtgacaccataggatcatac
attggctccaaggatgctaaaccaaaagatgtcagtagtgctgtggagatgatgaatgca
gagggaaaagttctgcgtgaacctccactggacacccagcggcgctctgcggaagccaaa
gacgacgatcccatcattccctttggtcctctgcccacagtgtctccttttggtgccatt
tcacgcacctctaaaacgggttaccagaccactggtcctgtacaggccatggcgtcctca
caggcctcgggctccaaacacatgaccatgacagactatccatatggaaaccacagcgga
tggggtggatcgtcctaccctcagcaccagagcatcaactctcagggacacttcagcgag
cgtctgcccatgtctgcccctgaccgtgagcagctcaagattgagctccagcaagtcaac
caacagatcagtcagcagacccgcgggatggaggctgccagtaactccatgctcctgcag
agggaggcgtgtgcgctggcgtctcagcctacggctggggttaagtggtcttcaggtggc
actgtgtccagtgaacagctcagcctggagcttcatcatgtagagcgagagatcggaaag
agaacccgtgaaattgccatggagaaccaggtggcccatgagtacaagctgaaggctact
gaaaatgggcagcctgaccataaagcccagctggaggagctctctttagcactgggtgag
gtgtctaatggatccagtggcatgaagccagccagtagtatgggtggatctatgctctcg
ctgtccaataagacatcgtctctcaccctctgctcagctgaccaagcggcgagtagctca
gaccttcaaaagaacggtgtcgttcactcttgctcttaa
DBGET
integrated database retrieval system
