Chanodichthys erythropterus (predatory carp): 137002814
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Entry
137002814 CDS
T10334
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
cery Chanodichthys erythropterus (predatory carp)
Pathway
cery03030
DNA replication
cery03410
Base excision repair
cery03420
Nucleotide excision repair
cery03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cery00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
137002814 (lig1)
03410 Base excision repair
137002814 (lig1)
03420 Nucleotide excision repair
137002814 (lig1)
03430 Mismatch repair
137002814 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cery03032
]
137002814 (lig1)
03400 DNA repair and recombination proteins [BR:
cery03400
]
137002814 (lig1)
Enzymes [BR:
cery01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
137002814 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
137002814 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
137002814 (lig1)
DNA replication proteins [BR:
cery03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
137002814 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
137002814 (lig1)
DNA repair and recombination proteins [BR:
cery03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
137002814 (lig1)
NER (nucleotide excision repair)
Other NER factors
137002814 (lig1)
MMR (mismatch excision repair)
Other MMR factors
137002814 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
137002814
NCBI-ProteinID:
XP_067218817
LinkDB
All DBs
Position
16:complement(5033236..5056026)
Genome browser
AA seq
994 aa
AA seq
DB search
MQRSIASFFQPMKGKEKSDGQAKVKAEPVKSPLKIQNGVQESDSPVKKVHKRSRVIIDSD
DEDQPVVKEQVPKQSEVQTAKPDKISDVAKAASTPVSPKTPITPKTPITPKTPVTSSASV
AVVTPASSGTPGTPATPTSTSPSGIPKRKTARKQFPKRKLESRSDGEGTKEDEGKEVDGG
QESKRARVGASPGQTENEMMEVEEKSTDGKTVVDEQKEEDEAKTSEVVDSAKNEMKQKDK
NDKKQEKKINEENAKKEKIEDKKKKEDNSPERAVKKEKGTEDEGGSAKKKPISSFFVPRK
AAVKLEKEERNAGEKKKDGEIADVAEQKETKSEKGVDSAVQSQYDPSRAQYHPIDHACWK
RGQKVPYLAVARTFEKIEEDSGRLRNIETLSNFLRSVILLSPDDLLCCVYLCLNQLGPAY
QGLELGVGDTVLMKAVAQATGRQLDKIKAEAQEKGDLGLVAESSRSNQRMMFTPASLTAG
GVFNKLKEIANMSGNSAMNKKIDIIKGLFVACRFSEARYIVRSLAGKLRIGLAEQSVLAA
LSQAVCLTPPGQEFPPAVLDAGKGMSTENRRVWLEEKALILKQTYCEMPNYDAIIPVLLK
EGIDELPNHCKLTPGVPLRPMLAHPTKGVGEVMKRFDEASFTCEYKYDGERAQIHILENG
EVRVFSRNQEDNTSKYPDIISRIPQVKKESVRSCVLDSEAVAWDREKKQIQPFQVLTTRK
RKDVDASEIKVQVCVYAFDLLYLNGKSLVREPLSKRRALLRESFEEKEGEFVFARSLDAD
NTEAIAEFLEQSVRDSCEGLMVKTLEKHATYEIAKRSHNWLKLKKDYLEGVGDTVDLCVI
GAYLGKGKRAGSYGGFLLACYDEENEEFQSVCKIGTGFKDEDLEQHYNFLKEHILPKPRP
YYRVDQSAEPDVWLEAVQVWEVKCADLSLSPIYKAAMGLVDPEKGISLRFPRFLRIRDDK
KPEDATTGSQIADLYKKQQQIQNQGEKPDLEDYY
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagcatagcgtcattctttcagccaatgaaaggcaaggagaagagtgatgga
caggccaaagtaaaggccgaacctgtgaaaagtcccctcaaaattcagaatggcgttcag
gaaagtgattcgccagtaaagaaggttcataaacgcagtcgagtaatcatagacagtgat
gatgaagatcagccagtggttaaagagcaggtgccaaaacagagtgaagttcaaacagca
aagccagataagatttctgatgttgcaaaggctgcctccactcctgtatctccaaaaact
cccataaccccaaaaactcccataacccccaaaactccagtcacttcgagtgcctctgtt
gccgtggtaacccctgcttcctcaggcactccaggaactccagcaactccaacatcaact
tcaccgtcaggcattcccaaacgcaagactgcccgcaagcagttccccaagaggaagctg
gaaagcaggagcgatggagaggggacgaaagaggacgaagggaaggaagtagatggaggc
caggagagtaagagagcacgagtgggggcctcacctgggcagacagaaaatgaaatgatg
gaggtggaagagaagagcacagacggaaagactgtagtggatgaacagaaagaagaggat
gaagcaaaaacgagtgaagttgtggacagtgctaaaaatgagatgaaacagaaggataaa
aatgataaaaagcaggagaaaaagataaatgaagagaatgcaaagaaagaaaaaatagaa
gacaagaaaaagaaggaagataacagtcctgaaagagcagtgaaaaaagagaaaggcaca
gaagatgaggggggatcggccaaaaagaaacctatcagcagcttttttgtacccagaaag
gcagctgtaaaactggaaaaagaggagcgaaatgcgggagagaaaaagaaagatggagaa
atcgctgatgttgctgaacagaaagagacgaaaagtgaaaagggggtggattctgcagtc
cagagccagtatgatccctccagagcacagtaccatcccattgaccacgcctgctggaag
aggggccaaaaagtgccatatttggctgtcgctcgcacctttgaaaagattgaagaggat
tcaggaaggctgagaaacattgaaactctttccaactttttgcgctctgtaattcttctc
tctccagatgacctgttatgttgtgtatacctgtgtctgaaccagctcggccctgcgtat
cagggtctggagctgggcgttggagatactgtcctgatgaaagccgtcgctcaagcaact
gggcgacagttggacaaaatcaaggcagaggctcaggagaaaggtgacctgggattggtt
gctgagagttcccgcagcaaccagagaatgatgtttacaccggccagtctgacagcaggg
ggtgttttcaacaaactgaaagagattgctaacatgagtggaaactctgcgatgaataag
aagattgacattattaaaggcttgtttgtggcgtgtcggttttctgaggcccgttacatt
gtgcggtcattggcggggaagctgcggatcggattggctgagcagagcgttctcgccgct
ctcagtcaggctgtgtgtctgacgcccccgggccaagagttcccaccagctgtgctggat
gcagggaaaggaatgagtacggaaaacaggagagtgtggctggaggagaaagcactgatc
ctcaaacagacatactgtgagatgccaaattatgatgcaattattcctgtattgctgaag
gagggcatagatgaactgcctaatcactgcaagcttaccccaggtgtgcccctgcgaccc
atgttagctcacccaactaaaggggtcggtgaggtaatgaaacgttttgatgaggcatct
ttcacctgcgaatacaaatatgatggagagagagcacagatccatattcttgagaacgga
gaggtgcgcgtttttagccgaaaccaagaggacaacacaagcaaatacccagatattatc
tcaagaatcccacaggtgaaaaaagagagcgttcgctcctgtgttctggattcagaggcg
gtggcctgggacagagaaaagaaacagatccagccgtttcaggtcctcaccacaaggaag
aggaaggatgttgatgcatccgagatcaaggttcaggtgtgcgtctatgcctttgacctg
ctgtacctcaacggaaagtctttggtgcgagagcctctaagcaaacgcagggctctgtta
cgggagagttttgaggagaaagaaggagagtttgtttttgctcgatccctggatgctgac
aacacggaagcgatcgcggagttcctggagcagtctgtacgagattcttgtgagggtcta
atggtgaaaacattggaaaaacatgcaacttatgaaattgccaaacgatcccacaactgg
ctcaagctgaagaaggactatctggagggtgttggagacacagtggatctgtgcgtgatt
ggtgcttatctggggaaggggaagagagcaggcagctatggagggttcctactggcctgt
tacgatgaggagaatgaggagttccagtctgtctgcaagattggaacaggcttcaaagat
gaagatctggagcagcattacaatttcttaaaggagcacattttacctaaaccacgcccg
tattatcgtgtggaccaatcagcagagccggatgtctggctagaggcagtgcaagtgtgg
gaggtgaaatgcgctgatctttcactgtctccaatctacaaggcagcaatgggattggtg
gacccagagaaaggcatttcactccgtttcccacgattcctgaggattagagatgacaaa
aaaccagaggatgccaccacagggtcacagattgctgatctctacaagaagcagcagcag
attcaaaatcagggtgagaaaccagatctggaggattactattga
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