Chanodichthys erythropterus (predatory carp): 137002870
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Entry
137002870 CDS
T10334
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cery Chanodichthys erythropterus (predatory carp)
Pathway
cery03013
Nucleocytoplasmic transport
cery03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cery00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
137002870 (upf1)
03015 mRNA surveillance pathway
137002870 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cery03019
]
137002870 (upf1)
Enzymes [BR:
cery01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
137002870 (upf1)
5.6.2.5 RNA 5'-3' helicase
137002870 (upf1)
Messenger RNA biogenesis [BR:
cery03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
137002870 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
137002870 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
SRP54
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
137002870
NCBI-ProteinID:
XP_067218896
LinkDB
All DBs
Position
16:12809159..12833112
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AA seq
1100 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGQTQSQLDNQVNG
PDGVLPNGEDAVVKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIGHV
IKVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGY
IYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTV
TSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLA
LHNQIRNMDSMPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICCTCVGA
GDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGL
SQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQWP
QPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQR
SYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLN
VALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLV
NTINPGARFMSTAMYDAREAMIPGSVYDRSNTGRPSNMYFQTHDQVGMIGTGPNPMGSMN
IPIPFNLVMPPMPPPGYLGQVNGPAAGRGAPKGKTGGRGGRQRNRGTGNHGSGQANMPSS
QASQDLVSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQMDVALSQD
STYQGERAYQHGGVTGLSQY
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcgcagacgctcaccttcctggacacggaggaa
gcggagctgctcggggccgacacgcagggctccgagttcgagttcaccgactttacgttg
cccagccagacccaaacgcagggccagacccagagtcagctcgacaaccaggtgaacggg
ccggatggagttctgcccaacggagaggatgcagtggtgaagaccagccaacttctggct
gagctgaactttgaggaggatgaggaagatacttactacactaaagatctgccagtgcac
gcctgcagctactgtggcatccatgatccagcatgtgtggtctactgcaacaccagcaag
aaatggttttgcaatggccgggggaacacctctggcagtcatattgtgaaccacttggtg
agggccaaatgcaaggaggtgacgctgcataaggacggaccactgggagagactgttctg
gagtgctataactgcggctgccgtaacgtcttcctgctcggcttcatcccggctaaagcg
gactctgttgtggtgcttctgtgcaggcagccgtgcgccagtcaaagcagtctgaaggac
attaattgggacagctctcagtggcagccgctcatccaggaccgctgcttcctgtcctgg
ttggtgaagatcccgtccgagcaggagcagctgagggcccgtcagatcacggctcagcag
attaacaaactcgaggaactctggaaggaaaacccaactgcgaccctggaagatttggag
aaacctggagtggatgaggaacctcagcacgttctgctgcgctacgaagatgcctatcag
taccagaacatttttgggccgctggtcaaactagaggctgactacgacaaaaaactcaaa
gagtcccaaactcaagacaatataacagtgaggtgggatttggggctgaataaaaagcgg
atagcttatttcactctgcccaagacggactcaggtgacatgcgactgatgcaaggagat
gagatctgtctgcgctataaaggagacttggctccgctatggaaaggaatcggacacgtc
atcaaagtcccggacaattatggagatgaaattgccatcgagctgcgcagcagtgcaggt
gcacctgttgaggtgccgcacaacttccaggtagactttgtctggaagtcgacatctttt
gacagaatgcagagcgccctgaagacgtttgctgtggatgagacctctgtgtctggctac
atctaccacaagctgctaggtcatgaggtggaagatgtcatcatcaaatgccagctgccc
aaacgcttcactgcgcagggcctgccagacctcaaccactcgcaggtttatgctgtgaaa
acggtactgcagcgacctctcagtctgatccaggggcctccaggaaccggcaagactgtc
acctctgccactattgtctaccatctggccagacagggcaatggtccagtgctggtttgt
gctccgagtaacatcgcagtggaccagcttaccgagaagatccatcagacggggctgaag
gtggttcgtctgtgcgctaagagccgtgaggccatagattcacctgtgtctttcctggct
ctccacaatcagatccgcaacatggacagcatgccagagttgcagaaactgcagcagctg
aaggacgaaactggcgagctgtcatcgtctgatgagaaacgctaccgagctctcaaacga
accgcagagagagagctgctcatgaatgcagacgtgatctgttgcacatgtgtgggtgcg
ggtgaccctcgcctggcaaaaatgcagttccgctccattctcatcgatgaaagcacccag
gccacggagcccgagtgcatggtgccggtggtgctcggggccaaacagctgattctggtg
ggtgaccactgtcagctgggtcctgtggtcatgtgcaagaaggcagctaaagcaggtctg
tctcagtctctgtttgagaggctggtggtcctgggcatcagacccatccgtctgcaggtg
cagtaccgcatgcacccggcgctcagcgctttcccttcaaacatcttctacgagggttcc
ctgcagaacggggtcactgccgctgatcgcatcaagaaaggctttgacttccagtggcct
cagccggataagcccatgtttttctatgtgacccagggtcaggaggagattgcaagctct
ggcacctcctatctcaataggactgaggctgctaatgtggagaagatcaccacccgtctg
ctgaaggccggagccaaacctgaccagattggcatcatcacgccgtacgagggccagcgc
tcttacctggtgcagtacatgcagttcagcggctcactgcacaccaaactctaccaggag
gtggagatcgccagtgtggatgcgttccagggcagagagaaggacttcatcatcctgtct
tgtgtcagagctaatgagcatcagggcatcggcttcctgaacgacccacgtcgtctcaat
gtggcgctaaccagagccagatatggcgtgatcattgtgggcaatcctaaggctctgtct
aagcagcctctgtggaaccacctgctcaactactacaaggagcagaaggttctggtggag
ggtccgctcaacaacctgagagagagtctcatgcagttcagcaaaccacgcaagctggtc
aacaccatcaaccctggagctcgtttcatgagtactgccatgtatgatgcgagagaggcc
atgattcctggatctgtgtatgaccgcagcaacactggacgcccatctaatatgtacttc
cagacccatgatcaggttggcatgatcgggactgggccaaacccgatgggctccatgaac
attcccatcccattcaatctggttatgccgccaatgcctccgcctgggtacctgggccaa
gtgaacggacctgctgctggtcgtggtgctcctaagggtaagaccgggggtcgtggaggt
cgtcagaggaaccgtggcacgggtaaccacggcagcgggcaggccaacatgccgagcagc
caggccagtcaggatctggtgtctcagcccttctctcagggtcctctgacccagggctac
atcaccatgagccagccttcacagatgagccagcctggcctgtcccagcctgagctctca
caggacagctacctgggtgacgagttcaaatcccagatggatgtggcgctctcccaggat
tccacctaccagggcgaaagggcatatcagcacggaggagtgactggactctcacagtac
tag
DBGET
integrated database retrieval system
