Chanodichthys erythropterus (predatory carp): 137002967
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Entry
137002967 CDS
T10334
Symbol
npc1
Name
(RefSeq) NPC intracellular cholesterol transporter 1
KO
K12385
Niemann-Pick C1 protein
Organism
cery Chanodichthys erythropterus (predatory carp)
Pathway
cery03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
cery04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
cery00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
137002967 (npc1)
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
137002967 (npc1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cery02000
]
137002967 (npc1)
Transporters [BR:
cery02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
137002967 (npc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NPC1_MLD
NPC1_N
Sterol-sensing
Patched
MMPL
ACR_tran
Motif
Other DBs
NCBI-GeneID:
137002967
NCBI-ProteinID:
XP_067219052
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All DBs
Position
16:complement(16854977..16885005)
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AA seq
1292 aa
AA seq
DB search
MRVTLVKSSGVRGAMPLLGGKHVFCILWAIILLSQWVHSQHCIWYGECGNSTKIQEKKLN
CNYTGPPIPLPDEGQELLQELCPGLAYGDNKVCCDTQQLKTLKSNIQIPLQYLSRCPACF
FNFMTLFCELTCSPRQSQFVKATDFSPDPEQNNTNVLEVSYYISQTFANAMYNACSDVQA
PSTNVKALSLLCGKDASECTPNNWIQYMFDINNGQVPFAINPVFSDVPVMHMTPMSNRTF
NCTQYLDDGSGPCSCQDCSKACGPAPVPPPILPPWTILGMDAMTVIMWCSYIGFLLIFFG
VVLGAWCYRQRMVTSEYGPILDSNQPYSLNSDGTDFVDEATCCETMGERFENALRVLFSS
WGSLCVRQPLTVILVSVVLVTICSAGLSYMKITTNPVELWSSPSSRARQEKNYFDQHFGP
FFRTEQLIITTPWNKSGSFSPTTGPDINFSPILNISLLHQVLDLQTEIANLTAEYKGETV
TLQDICVSPLAPYNDNCTILSVLNYYQNSHEVLDHVVKDEFFVYFDYHTHFLYCVSSPTA
LDDTSPKHDPCMGTYGGPVFPWLVLGGYEGNDYNNATALVITFPVNNYLNDTDKLGKALA
WEKVFINFVKNYKNPNLTISFSSERSIEDEIDRESNSDVTTILVSYIIMFVYISLALGHI
NSCRTLLVDSKISLGIAGILIVLSSVACSLGIFSYIGIPLTLIVIEVIPFLVLAVGVDNI
FIIVQTYQRDERMPEEELHQQIGRILGEVAPSMFLSSFSETVAFFLGALSSMPAVRTFSL
FAGLAVFIDFLLQISCFVSLLGLDIQRQEANRPDILCCVKLSDQPQEKSEGCLFRFFKKI
YAPFILKDWVRPLVVAVFVGMLSFSIAVVNKVEIGLEQTLSMPDDSYMLDYFGNLSKYLH
TGPPVYFVVEDGHDYKTSEGQNAVCGGVGCNSNSLVQQIYTASLLNNYTKISNVPSSWLD
DYFDWVKPQSSCCRYYNTTGAFCNASVVSDLCVHCRPMSATGKQRPNGTEFMHFLPMFLS
DNPNINCGKGGHAAYGTAVDLKENNTDVGATYFMTYHTILKKSADYIDAMKMARELADNI
TQAIKPHDKSYRVFPYSIFYVFYEQYLTIIYDTAFNLGVSLMAIFVVSTVLLGFELWSAV
LVSFTIAMILVNMFGVMWLWNISLNAVSLVNLVMSCGISVEFCSHIVRAFSVSTRSSRVE
RAEEALAHMGSSVFSGITLTKFGGILILALSKSQIFQVFYFRMYLAIVLLGASHGLIFLP
VLLSYAGPSVNKAKVMAAHNRFVGTERERLIY
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
atgagagttactctagtgaagagctctggagtcagaggagcaatgcctctactcggggga
aaacacgttttctgtattttatgggccataattttattatcacagtgggtgcacagccag
cactgtatatggtatggtgaatgtggaaactccaccaaaattcaagagaagaagttaaac
tgcaattacacaggcccccctatacctttacctgatgaaggacaggaactgctacaggag
ctgtgcccagggctggcttatggagacaacaaagtttgctgtgacacccaacagcttaag
actctgaaaagcaatatccagatcccccttcagtacctgtccaggtgtccagcatgtttc
ttcaacttcatgaccctgttctgtgagctaacctgcagtcccagacagagccagttcgtc
aaggccacagatttctctccagaccctgagcaaaacaatacgaatgtacttgaggtgtcc
tattacatcagccagacctttgccaatgccatgtacaatgcctgcagcgatgtccaggcc
ccctccaccaatgtcaaagccctcagtctgctgtgcgggaaagacgccagtgagtgcact
cccaacaactggatccagtacatgttcgacatcaacaatggccaagtcccctttgcgatt
aacccagttttctcagatgttcccgtcatgcacatgactcccatgagcaacagaacgttt
aactgtacgcagtatctggatgatggctcagggccctgctcctgtcaggactgcagtaaa
gcatgtggccctgcacctgtgccccctccaatccttccgccctggaccatcctcggcatg
gacgccatgaccgtcatcatgtggtgttcttatataggcttcctcctcatcttctttgga
gttgtactgggagcatggtgttacagacagaggatggtcacatctgaatatggcccaatt
cttgacagcaaccagccctactccttgaactctgatggcacagattttgtagatgaagca
acttgctgcgagacgatgggcgagcggtttgagaatgcgctccgtgttctcttcagcagc
tggggctcattgtgtgtgcggcagcccttaactgtgatcctggtcagcgtggtgctggtg
acgatctgctcagccggactgtcctacatgaagatcaccaccaacccagtggagctctgg
tcgtctcccagcagcagggccaggcaggagaaaaactattttgaccagcactttggacca
ttcttccgcaccgagcagctcatcatcaccaccccgtggaataagtcgggctccttttca
cccaccactgggccagacatcaatttctcccccattctgaatatatcactcctccatcag
gtgttggatctccaaacagaaatagcaaatcttacagctgaatataaaggagagacggtg
actcttcaagacatctgtgtttctccactggctccttacaatgacaactgtaccattctg
agtgtgttaaactactaccagaacagccatgaagtcctggatcatgtggttaaagatgaa
ttctttgtatactttgactaccacactcactttctgtattgtgtcagttctcccacggcc
ctggatgacacaagtccaaaacatgacccctgcatgggtacatatggaggcccagttttc
ccctggcttgttcttgggggatatgagggcaatgactacaacaacgccacagctctagtg
atcacctttcctgtcaacaactacctgaatgacacagacaaattaggcaaagctttggca
tgggagaaagtgtttatcaactttgtaaagaactataaaaaccccaacctcaccatctcc
ttcagctcggagcgcagcatcgaggatgagattgaccgtgagagcaacagtgatgtcacc
actatcctggtcagctacatcatcatgtttgtctacatctcgctggctctgggccacatt
aatagctgccggaccctgctggtggactccaaaatctctcttggtattgccggtatcctg
atcgtgttaagttcagtggcatgttcgctgggtatcttcagctacatcggcatccccctc
acgcttatcgtcattgaggtcattcccttccttgtgctggcagtgggagtggacaacatc
ttcatcattgttcaaacctaccagagagacgagcgaatgccagaggaagagcttcatcag
cagattggtcgtatcctcggagaggtggctcccagcatgttcctctcttcgttctctgag
actgttgctttctttttaggtgctctgtccagcatgcctgcagtgaggacgttctctctg
ttcgctggtctggctgtcttcattgacttcctcctgcagatcagctgctttgtgtctctg
cttggcctggacatccagagacaagaggcaaatcggccagatatattgtgctgtgtaaag
ttgtctgatcaaccacaagaaaaatcagaaggttgtctgttccgtttctttaagaagata
tacgctcctttcatcttaaaggattgggtgcgccccctggtggttgctgtgtttgtggga
atgctgtcatttagtatagccgttgttaataaagtggagattggacttgagcagacgttg
tccatgcctgatgactcctatatgctggattactttgggaatctcagtaagtacctgcac
accgggccgcccgtttactttgtggtagaggatggacatgactacaaaacatctgagggg
cagaacgcggtgtgtggtggagtgggctgcaacagcaactctctagtccagcaaatttat
accgcttctctcttgaataactatactaagatcagtaacgttccgtcatcatggctggat
gactactttgactgggtgaagccgcagtcgtcctgctgcagatattataacaccacagga
gctttctgcaatgcttcagtggtgagtgatctctgtgttcactgcagacctatgagcgct
actgggaaacagaggccgaatggtactgaatttatgcacttccttcccatgtttctctca
gacaacccaaatatcaactgtggaaaaggtggtcatgctgcctacggcactgctgtggat
ctcaaagagaacaacactgatgtaggcgccacatacttcatgacctatcacaccatctta
aaaaagtcagctgactacattgacgccatgaagatggcacgagagcttgcagacaacatc
acgcaggccatcaaaccgcatgacaagagttaccgtgtcttcccttacagtatattctac
gtcttctatgaacagtacctcactatcatctatgacactgcctttaacctcggtgtgtca
ttgatggccatctttgtggtgtctacggtgcttttgggcttcgagctgtggtctgcagtg
ctggtgtccttcaccattgccatgatcctggtcaacatgttcggagtcatgtggctgtgg
aatatcagcctcaatgccgtctcattggtcaaccttgtcatgagttgtggcatatcagtg
gagttctgcagccatatagtgagggctttctctgtcagtaccaggagctcgagggtggag
cgggcggaggaggcgctggcacacatgggcagctctgtgtttagcggcatcaccctcact
aaatttggtgggatcctgattctcgccctgtccaaatcccagatctttcaggttttctac
ttccgcatgtatcttgcaattgtcctgctaggagcctctcacggcctcatcttcctgcct
gtattactcagttatgcaggcccatctgtaaataaagcaaaagtcatggctgctcacaac
aggtttgtgggtacagagagagagcgactcatctactaa
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