Chanodichthys erythropterus (predatory carp): 137003040
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Entry
137003040 CDS
T10334
Symbol
xrn1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
cery Chanodichthys erythropterus (predatory carp)
Pathway
cery03008
Ribosome biogenesis in eukaryotes
cery03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cery00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
137003040 (xrn1)
09123 Folding, sorting and degradation
03018 RNA degradation
137003040 (xrn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cery03019
]
137003040 (xrn1)
03009 Ribosome biogenesis [BR:
cery03009
]
137003040 (xrn1)
03016 Transfer RNA biogenesis [BR:
cery03016
]
137003040 (xrn1)
03036 Chromosome and associated proteins [BR:
cery03036
]
137003040 (xrn1)
Messenger RNA biogenesis [BR:
cery03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
137003040 (xrn1)
mRNA degradation factors
5'-3' decay
5' exonucleases
137003040 (xrn1)
Ribosome biogenesis [BR:
cery03009
]
Eukaryotic type
Pre-60S particles
RNases
137003040 (xrn1)
Transfer RNA biogenesis [BR:
cery03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
137003040 (xrn1)
Chromosome and associated proteins [BR:
cery03036
]
Eukaryotic type
Gene silencing
piRNA pathway
137003040 (xrn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
137003040
NCBI-ProteinID:
XP_067219156
LinkDB
All DBs
Position
16:complement(23693148..23718315)
Genome browser
AA seq
1696 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKI
FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEEKIKKALEKGE
VLPTEARFDSNCITPGTDFMARLQEQLKYFVHNKLSTDKSWQGVNVYLSGHETPGEGEHK
IMEFIRSESSKPGHNPNTRHCLYGLDADLIMLGLTSHEPHFSLLREEVRFGGKKSQKRIT
APEETTFHLLHLSLMREYIDYEFSELRNKISFEYDLERIIDDWVLMGFLVGNDFIPHLPH
LHINHDALPLLYRTYISVLPSLGGYLNENGHLNLAHFEKYLEKLSDFDREHFSEVFVDLK
WFESKVGNKYLNEAAGLAAEEADIKDLKKSKSSDDSLCLSALDGVRESHSAQGREGAEED
GEDDDMFETEFRQYKRTYYMTKMEVEVVSDEFLANQAKCYVEGIQWILHYYYHGVQSWSW
YYPYHYAPFLSDVRNISSLKLTFDLAKPFMPFEQLLGVLPSASKDLLPQCYQHLMTSLSS
PIVEYYPQDFKTDLNGKQQEWEAVVLIPFIDEKCLLAAMEPYTHKLTPSEKARNRHTECA
VYCFDKELDYAYSSPLPELFPNIVHCHVRQTPIPMDAWRVSLDHVGRRIDRGALYFCGFP
TLQHIRHKFYKKKSGVLVFQQSSRGENMILEILASQEVAQVEDVAALVLGKSLFVNWPHL
MEARVIAVSDGETKFFLEEPSGSQVLYLDNTPPPTKVTHLTDKEQKEWVKDVQGLLEHFS
KRKGIVINETDVVVYVQLLTGRKYVIGQNGSVHLEKQFAKQVLPFPYQTIVKDIKTFDSS
LARFKTLEELFPPGTAVFMVGNPYYGAMGDVQDSSDVISEGRVRVVFSVPCEPQLDALIQ
NQHKYSVKYCPGYVLASRLGITSYLVSRFSGSIFIGRGSKKNPHGEQKVNVGLNLKFNKK
NEEVPGYTKRTEKEWLYSAAVEELLAEYLERFSEVFDYVARNSHDDVFYEDDIWPGEDEN
GAEKIQEIQGWLKTHPVSSTSRASCDLQILDAGIVEKIEEELEKTKAKKMNKKVRVTVKP
HLLFRPLEQQFGVIPDPDAEYHLFDRVVNVRESFSVPLGLRGTVIGIKGAEREAEVLYEV
LFDEEFAGGLTVRCSPGRGYRLPPSALINLSHGSRKEQGTHKLTAIVKPQPSSSSHLTHK
SQLGGLNHSPRSPFIPTQQQNGRQSFNLRTDTQGNRNSPHKALNQKNQHKGSSNEKEFSN
VWQSLQSSGMPQKPPAHWQNNDGKSCGPVPHQHQLEGQNKQSQGNDPSNKLASGGNIRLL
KRNEDLNTALAQGPSNKASTEFEELIANLKISKDPEPAQHHLPKEPKNQSGEPLSPQSFA
MKGTLVLKEMLKIDSSGTSSAPDSTSANTNTQQQSKRRSSKKLAARINTPQADAPAPTAP
PPPPLAGQPPLLPSMATELGRICMGLGMGPPDFAFLRNRQSLTVCQVKLSNGLLVHGPQC
QSETEAKEKAALFALQRLNSLGSFPLPPPIFPGVQQMRPLAPHPSMFGQPAGGLLIPPQG
FGPLHWGMQFPHQGQPFYGGTFPGARAPAPSAASGSHNQFVPLQVTKKRVSGRTKNQGAK
QASGSSVYSSQAPGSGQAASAPSAPKTPPPISTHELADKTTPKTPRQNANPHTPGSASKR
KHRKLAVNFEAAKVTD
NT seq
5091 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgcctaaattttatcgatggatatcggagcggtatccgtgtctaagtgaagtt
gtcaaggagcatcagatcccagagtttgacaacctatatttagacatgaatggcatcatc
caccagtgttcccaccccaatgatgaggacgtacacttccgtatttctgaagaaaagata
ttcgcagacatttttcactacctggaggtgctctttcgcatcattaagcccaggaaagtg
ttcttcatggctgtcgatggagtcgcaccaagggccaagatgaaccagcagcgtgggaga
agattcaggtcagcgaaagaagccgaggagaaaatcaagaaggccctggaaaagggtgaa
gttttgcccacagaggccagatttgactctaactgcatcactcctggaacggatttcatg
gccaggctacaggaacagcttaaatattttgttcacaataaactgtccacagacaaatca
tggcagggagtgaacgtgtatttgtctggtcatgagacccctggtgaaggagagcacaag
atcatggagttcattcgctctgagagctccaaaccgggtcataacccaaacacaagacac
tgcctttatggtctggatgctgacctgataatgcttggcttgactagccatgagcctcat
ttttctctcctcagagaggaggtacgcttcggaggcaaaaagtcacaaaagaggataaca
gctcccgaggagacgacatttcacctgctccatctctcccttatgagggaatacattgac
tatgagttttcagagctcaggaataagatctcgtttgagtatgacctagagcggatcata
gacgactgggttctgatgggtttcctggtggggaatgacttcatccctcatcttccccac
cttcacatcaatcatgatgcgttaccgctgctctatcgaacttacatcagcgtgctgccc
agtctggggggctacctgaatgaaaatggtcatctcaaccttgcccactttgagaagtac
ctcgagaagttgtcagattttgatcgtgagcacttcagtgaggtgtttgtggatctgaag
tggtttgagagtaaggtggggaacaaatacctgaatgaagcagctgggctggcagccgag
gaggctgatatcaaagacttgaagaagagtaagtcttcagatgactctctctgtctgtcc
gctcttgatggagtcagagaatctcacagcgctcaaggaagagaaggtgcagaggaggat
ggtgaggatgatgacatgtttgaaacagagtttcgacagtataagcgcacctactacatg
accaagatggaggttgaagtcgtctcagatgagtttttggccaatcaggctaagtgttac
gtggagggtatccagtggatcttgcattactactaccatggagtgcagtcctggagctgg
tattatccgtaccactacgcccccttcctctctgatgtgagaaacatctctagtctcaaa
ttgacctttgatctggccaaacccttcatgccattcgagcagctattgggcgtcctgcca
tcagccagcaaagaccttcttccacagtgttaccagcatctgatgacctcactgagctca
cccattgttgagtattacccacaagacttcaaaactgacctgaacggcaaacagcaggag
tgggaagccgtggtgcttatcccgtttatcgacgagaaatgcttgttggctgctatggag
ccctacactcataaactgactccatcggagaaggccaggaacagacatactgagtgtgcg
gtctactgctttgataaagagctggactatgcctacagttcccccctccccgaactcttc
cccaacatcgttcactgtcatgtcaggcaaacaccaatcccaatggatgcatggcgtgta
tcactggatcacgttggccgcaggattgacagaggagcgctttatttctgtggcttcccc
acgttacagcatatccgtcataaattttataagaagaaaagtggagtattggtgtttcaa
caaagcagcagaggagagaacatgattctggagattttagcctcccaggaggtggcgcag
gtggaagatgttgcagcgctggttcttggaaagtctttgtttgtgaactggccccatttg
atggaagctcgagttatagctgtttcagatggagaaacgaagttttttttagaagaaccc
tcaggatcacaggtgttgtatctggacaacactccaccgcctactaaagtgacccatttg
actgataaagagcagaaggagtgggtcaaagatgtgcaaggcctcttagagcacttcagc
aaacgtaaaggcattgtgatcaatgagacggatgtggtggtttacgtccagctgctgaca
ggcaggaagtatgtcattggtcagaacggatcggtccatttggagaagcagtttgccaaa
caggttctaccctttccataccagaccattgtgaaggatatcaaaacctttgattcgtca
ttggcgcgcttcaagacactggaggagctgtttcctccaggaactgctgtctttatggtt
ggaaacccatattatggtgcaatgggtgatgtgcaagattctagtgatgtcatcagtgag
ggacgagtcagagtggtcttctctgtaccatgtgaacctcaacttgatgccttaatacag
aaccaacataaatactcggtgaagtactgtcccgggtacgtgctcgcctctcgccttggt
atcaccagctacctcgtctcaaggttctccggtagcatcttcatcggaagaggatccaaa
aaaaatcctcatggagagcagaaagtcaatgtgggccttaatctcaagttcaacaagaag
aatgaggaagttcctggctataccaagagaacagagaaggagtggctctattctgctgct
gtagaggaactcttggctgaatacttagagagattttcagaggtgtttgactatgtagca
cgaaacagccacgatgatgtcttttatgaagatgacatctggcctggagaggatgagaat
ggggctgaaaagatccaggagatacagggctggttgaaaacccatccggtcagctctacc
tcacgagcatcatgtgatctgcagatcctggatgccggcattgtggagaagattgaggag
gagctggagaaaacaaaggcaaagaagatgaacaagaaagtgcgggtcactgtgaagcct
cacctgctttttaggcctctggagcagcagttcggtgtcattccagatcctgatgcagag
tatcatctgtttgaccgtgtggtcaatgttagagagagcttctctgttccacttggcctt
cgaggaactgtcattggtatcaaaggagctgaacgtgaggctgaggttctatatgaagtg
ctgtttgatgaggagtttgctggaggactcactgtcaggtgctctcctgggcgtggctat
cgactgccccccagtgccttaatcaacctgagccatggcagcaggaaggagcagggcaca
cacaaactcactgccatcgtcaaaccccagccctcgtcctcatctcatctcacacacaag
agccagctgggtggccttaatcactcgccacgctcaccgtttatacctacgcagcagcag
aatggccgacaaagtttcaatctcaggactgacactcagggcaacagaaactctcctcac
aaagccctaaaccagaaaaaccaacacaagggctctagtaatgagaaggagttcagtaat
gtatggcagtctcttcagagttcaggaatgccccagaaaccaccagctcactggcaaaat
aatgatgggaaaagctgtggaccggtgccacatcagcaccagctggagggacaaaataaa
cagagccaaggcaatgacccatccaacaaacttgcgtcaggtggcaatattagactcctg
aagagaaatgaggatctgaatacggctctcgcacaggggccttcaaataaggcatctaca
gagtttgaggagcttatagccaatctaaagatctccaaggatcctgagcctgcccagcac
catctgcctaaagaacccaagaaccaatccggagagcctctttccccacagtcctttgct
atgaagggaactctggtattgaaagaaatgttgaagattgacagctctggaacaagctct
gcccctgattccacttcagcaaacaccaacacccaacagcagagcaagagacgctccagc
aaaaaactagctgctcggataaacactccccaggctgacgccccagctccaactgctcct
cctcctcctcctctggctggacagccgcccctactgcccagcatggccactgaactcggg
cggatatgcatggggcttggaatgggaccaccagacttcgccttcctccgtaacagacag
agtctgacagtgtgtcaggtgaagttgtctaatggtctgctggttcacggtccacagtgt
cagtctgaaactgaagctaaagagaaagctgctctctttgcccttcaacgattgaactcg
ttgggttctttcccactgcctcctcccatattccctggagtccagcagatgaggcctctt
gctcctcacccctccatgtttggtcagccagcaggtggtcttctgatccccccacaaggg
tttggacctcttcactggggtatgcagtttccccaccaagggcagccgttctatggaggt
acttttcctggagcacgagcccctgcgccatcagctgccagtggatcccacaaccagttt
gttcccctccaggtgaccaagaagcgagtttcaggcagaaccaagaaccaaggggcaaag
caagcgtcaggcagctcagtctattctagtcaggctccgggcagtggacaggctgcttcg
gccccatcagcccccaagacccccccacccatcagcacccatgagctagcagataaaacc
acacccaagacacccaggcagaacgccaatcctcacacgcctggctcagcctccaagcgg
aaacacaggaaactggcagtcaacttcgaagctgcgaaagtgacggactga
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integrated database retrieval system
