Chanodichthys erythropterus (predatory carp): 137004465
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Entry
137004465 CDS
T10334
Name
(RefSeq) ATP-dependent RNA helicase DDX42-like
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
cery
Chanodichthys erythropterus (predatory carp)
Pathway
cery03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cery00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137004465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cery03041
]
137004465
Enzymes [BR:
cery01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
137004465
Spliceosome [BR:
cery03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
137004465
Complex B
137004465
Complex C
U2 SnRNP specific factors
137004465
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Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
DEAD
Cas3-like_C_2
P-loop_SecA
ResIII
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
137004465
NCBI-ProteinID:
XP_067220917
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All DBs
Position
3:complement(36093867..36099997)
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AA seq
619 aa
AA seq
DB search
MHCGYGDLHDEMEEVVDYDSDGNPIAPTTKKIILPLPPIDHSEIDYPPFEKNFYIEHEEL
SSLTGAGVVELRQKLNLKVSGAAPPKPATSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGV
PISLSGRDMIGIAKTGSGKTVAFIWPMLVHIMDQKELEPGEGPIAVIVCPTRELCQQIHA
ECKRFGKVYGLRSVAVYGGGSMWEQAKALQEGAEIAVCTPVFLVNNDRILAFWAELFLLR
NKSTIELPCLKLNLHYTEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVV
QGDIGEANEDVTQIVEVLLSGKEKWGWLTRRLVEFTSAGSVLVFVTKKANCEELATNLNQ
EGYSLGLLHGDMDQSERNKVIADFKKKNLPILVATDVAARGLDIPSIRTVVNYDVARDID
THTHRIGRTGRAGEKGVAYTLLTTKDTSFAGDLVRNLEGANQSVSKDLMDLAMQNPWFRK
SRFKGGKGKKINIGGGGLGYRERPGLGSESTERSSSGGAALGNYEAYKPSTGAMGDRMSA
LKQAFQAQYKNHFVAASGVPPKLTTKSSSSSGWTSAGSLSSLPSGAPEGPDRPHLPYSPT
SSSSFSSMAPPLPSAQAPK
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgcactgtggatatggagatctgcatgatgagatggaggaagtagtggattacgacagc
gatgggaatcccattgctcctactaccaaaaagattatcttgcccctgccccctatagat
cactcagagatcgactatcctccctttgagaagaacttctatattgagcatgaggaactc
agcagtctgactggggctggagtggtggaactgagacagaagctcaacctgaaggtttca
ggtgcagcccctcctaagccagctaccagttttgcccactttggatttgatgaacagctt
atgcaccagatccgtaaatccgagtacactcaacccacacccatccagtgccagggtgtt
cccatatctttgagtggtagagacatgattggcattgccaaaaccggcagcggaaagacg
gtagcttttatttggccaatgctggtgcacatcatggaccagaaggagctggagccggga
gaaggacccattgctgtgattgtctgccccaccagagagctgtgtcaacagatccatgcc
gaatgcaagcgcttcgggaaggtatatggcctccgctcagtggcagtgtatggaggcggc
agcatgtgggaacaagccaaagctctacaggaaggggctgaaattgctgtctgcacccca
gtgtttcttgtaaataatgatagaattttggcattttgggctgaactattccttttaaga
aacaaaagtacaattgagctgccttgtcttaaattgaatctgcattatacagaataccaa
gtgagatccattgccagccacgtcagacctgatcgacagactctcttattcagtgcaaca
tttcggaagaaaattgaaaagctggcacgagatattttgatcgaccccatccgtgttgtg
cagggtgacataggagaggctaatgaagatgtcactcagatagtggaggtactgctgtct
gggaaagagaagtggggttggctgacgcgcaggctggtggagtttacctccgctggctca
gtgctggtctttgtcactaaaaaggctaactgcgaggagctggctacaaatttgaatcag
gaaggttatagcctgggactgctccatggagatatggatcagagtgagaggaacaaagta
attgctgactttaagaagaagaatctgcccatattggtagctactgatgttgctgctcgc
gggttggatattccatctatccgtacagtcgtgaactacgacgtagcacgagacattgac
acacacacacatcgaattggtagaacaggtcgtgcaggagagaaaggtgtagcttacacc
ctgctcaccactaaagacacttcatttgctggtgacctggttcgcaatttagagggagcc
aatcagagtgtttcaaaggacctgatggacctggcaatgcagaatccctggttcaggaaa
tcccgctttaagggtgggaaagggaagaagataaatattggaggtggaggcctgggttac
agggagagacctggccttggatctgaatctactgagcgcagtagtagtggcggtgctgct
cttggtaactatgaggcctacaaaccctcaactggagccatgggagaccgtatgtctgcc
ctgaagcaagcatttcaggctcagtataaaaaccactttgtggcggcatctggtgttcca
cctaaacttaccacaaagtccagcagctcttctgggtggaccagtgcaggaagtctaagc
tctttgccttcaggagcacctgaggggcctgacagaccccacctgccctactcgccaacg
tcctcttcctcattttcctccatggcgccgcccctgccctcagctcaggcaccaaaatga
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