Chanodichthys erythropterus (predatory carp): 137008975
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Entry
137008975 CDS
T10334
Name
(RefSeq) collagen alpha-1(XX) chain
KO
K24357
collagen type XX alpha
Organism
cery Chanodichthys erythropterus (predatory carp)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
VWA_2
FN3_Tor_3rd
NDNF
YjeF_N
Motif
Other DBs
NCBI-GeneID:
137008975
NCBI-ProteinID:
XP_067226908
LinkDB
All DBs
Position
20:complement(26403209..26437858)
Genome browser
AA seq
1569 aa
AA seq
DB search
MMAHIFPLVLLERTTLILVTVLLMLVFEVHSQGRLKLTVLSEDRLQMKWKEAEGPVQGYK
VRVRPITEVQQPELMLTTTRGRATVAGLDSRQEYLLQVLVLNGTQEKLIAKRRFTIDGLR
EEELIRSGNREQKKKTPSIGSGSGEVDDVTEALAALPTVLYQEPTTTEPPAVPELEPEID
RSPKEKKKKDKNRSKTEDKNDQEDNGGKSLKDEVTNTNKLRKTTPTQPVTGVSTRKPFEC
SAGVQADLVLLVDGSWSIGRTNFRKVRDFLEGLAVPFHIGPQGVQIALSQYSGDPRTEWH
LNNFTSREPLLEAIRNFRYKGGNTFTGQALIHALQNNLKEEVGARPNTPQFLLLLTDGKS
QDDAIAAANRLKNAGVEIIAIGVKNADEAELRQVASEPLELNVYNVNDFPLLSKLVGRLA
RILCGKIEDRIKAKRMERPTQDPVLSYPSPTDLQYVGLGSREVRLRWMAPSKGPQQYRVV
YHTAEGQSLKEVVVNGTSSTALLTGLSSQTQYHLSIFPVYEHNVGSALRGTFTTLPLAIP
EALEVTASSPSSLRVRWQPAAGATQYMALYSALNDGEPDDAKEVKFGPAQTDVELVDLMP
STDYSVTLYALYDEDPSDPITAIGTTFPLPSPLSLQFPMVSHSTLKVTWVPGAVDVPAHR
IVYSTNHGSDVKQVEVKGVNTVLLQNLSSLSRYLVSVQSLYEKGLSTPVTANVTTLRVPA
PSDLRVTNFSGSDITVRWEAAADDVVSYLIKWISLSGGDLRQLTVDGESEGAILEEVEED
KEYQISLSALYADGAQSEAVAIRYSTLSGGGPSSLSISEETAVSMLVTWVHPNAHVLQYR
VSYTPLNGDARENSVSLPGRERRVLLQNLQPDTRYSVLVTAEYRSREGGSASAQGKTTSL
RVSSVSVVRSDHSSICVSWRPVPAVSGYRIVIQALRDKQTKEEIVDAGSSSHCFSELQSE
TVYRISVHSRLGTVEGGAVTILHPTATAPVRIQVPPRLHPIQREVCPEMTVRNHVIKGFN
MMEAFGLTQRAHSTIEGVAAEPFIFNTLPSYTLYRDVQLTQSTGFIHPAGFSPEHTISMA
FRLLQDSPREPFALWQLTDNDFQPKMGVVLDPEKKLLLYFSLDYRGEIQELTFDQPQVHS
VFYGSFHKIHLSVSQVSVSLSVDCQRVGERPARPLGTLPTDGFEMLGKLVRTRGPHSGSA
AFQLQSFEIVCNTTWASEDSCCDLPSQRDDESCPAPAYACTCTTDIPGAPGDIGPPGRPG
PRGEKGEKGELGQKGEVGPPGKPGPEGGFGTLGPAGPRGIAVMGKVGPPGARGEKGEIGR
PGSQGLPGPPGPKGEEGIPGPKGTRGVEGNIGSPGITGPRGFHGMPGHPGPVGERGPLGP
VGPTGLPGSKGERGEKGEPQSLAVIFQLVSQACEKLVHNEVLKLDAFLNEMNRKPVPIQE
PVAPPGEPGIPGGRGSPGSRGPQGRQGSRGESGRPGYPGEQGRRGMPGEKGSPGANVLGP
QGIKGFAGPPGESKTGEPGPKGEDGKAGPPGIPGASGLRGEVGPPGVCDSSGCYQGPPAA
EDPYLGYQP
NT seq
4710 nt
NT seq
+upstream
nt +downstream
nt
atgatggcccacatctttcctctcgtcctcctagagcgaacgacactcatcctggtgacg
gttctccttatgctggtttttgaagttcattcccaaggccggctgaagctgactgttctg
tctgaagatcggctgcagatgaaatggaaggaggcggaaggaccagtgcagggttacaag
gtccgtgtgcggcccatcacagaggttcaacagccagagctgatgctgacgaccacacgc
ggccgggccacggtggcaggcctggactccagacaggaatacctcctccaagtcctggtg
ctcaatgggacacaggagaaactcattgcaaaaagacgttttaccatcgatgggttgcgt
gaggaagagttgatccgcagtgggaacagggagcagaagaagaaaactccctccattggc
tctggatctggagaggtggatgacgtaacggaggctctagcagcccttcccactgttctc
taccaagaaccgacgactacagagcctcctgctgtacctgagcttgagccagaaattgac
agaagccccaaagaaaagaaaaaaaaagacaagaatcgatccaagactgaggataaaaat
gatcaagaggataatggagggaagtcattgaaagacgaagtcaccaacaccaacaaactg
agaaaaaccaccccaacacaacctgtcacaggtgtttccactcgaaagccgtttgaatgc
agtgctggagttcaggcagatctggtccttcttgtggatggatcctggagcatcggccgc
acaaacttcagaaaagtgcgtgacttcctggagggcctggctgtcccctttcacatcggc
ccacagggcgtgcagatagcattatctcagtacagtggagatcctcgcacagagtggcat
cttaataacttcacctctagagagccacttttggaggccatcaggaacttcagatacaag
ggaggcaacactttcactggtcaggctcttatccacgctcttcagaacaatctcaaggaa
gaagtgggagcacggcctaacaccccacaattcctgctgcttttaactgatgggaaatct
caggatgatgccattgctgcagctaacaggctgaagaatgctggagtggagataattgct
ataggtgtgaaaaatgcagatgaggccgagttgaggcaggtggcatctgaaccactggag
ctgaatgtgtataacgtgaatgattttcctctgctcagtaaactggtgggaagactagca
cgcatcctctgtggcaagattgaagaccgtattaaagcgaagagaatggagcgacccact
caggacccagtcctgtcctatcccagcccaactgatctgcagtacgtaggactaggctca
cgagaggtgcgcctgcgttggatggcccccagcaaaggtccccaacagtacagagtagtg
taccacaccgctgaaggacagagtctgaaagaggtggtggtgaatggaacaagctccaca
gcactgctgacaggactgtcctcacagacacagtaccacctgtccatcttccccgtctat
gagcacaatgtgggctctgctctcagaggaaccttcacgacgttaccattggcgatacct
gaggctctagaggtcaccgcctcctcccccagcagcctgcgagtacgctggcaaccggcc
gcaggagccacacagtacatggccttatactctgcgctcaatgatggagagcctgatgat
gccaaagaggtgaagtttggacctgctcagacagacgtagagttagtggatctgatgcca
tccacagattattcagtcacactttatgctttgtatgatgaggaccctagtgaccccatc
actgccatcggcaccacattcccattgccgtctcctctcagtttgcaatttcccatggtt
agtcatagcactctgaaggtcacatgggtccctggagctgtcgatgttcctgcacaccgc
atcgtctacagcaccaatcacggcagtgatgtcaagcaggtggaggtcaaaggtgtgaac
acagtgttgctgcagaatctgtcttccctctccaggtatctggtgtcagtccaatcactc
tatgaaaagggcctttccactcccgtcacagccaatgtcactaccttgagggtcccggct
ccctcagatctgagagtcactaacttctccggcagtgacataacggtgcgatgggaagcc
gcggcagatgacgtggtctcttatctcatcaaatggatctccctcagcggaggagacctc
aggcagctgacagtagatggggagagtgagggggcaatcttggaagaggttgaggaagat
aaggaatatcagatttcactctctgctctatatgccgatggggctcagagtgaggctgtg
gccattcgatacagcaccttgtctggaggtggtccgagcagtttatccatctcagaggag
acagcagtcagtatgctggtcacctgggttcaccccaatgcccatgtgctgcagtaccgt
gtgtcttacactcccctcaatggggatgcaagagagaactcagtgtcattgccaggcagg
gagaggcgggtccttctgcagaatctgcagccagacactcgttacagtgtgctggtgact
gctgagtaccgcagcagagagggcggcagtgcctcagctcaggggaaaaccaccagcctg
cgggtgagcagcgtgagtgtggtacggtctgaccactccagtatatgtgtgtcctggagg
cccgtaccagcagtcagtggttatcgcatagtcatccaggccctcagagataaacagact
aaggaggagatagtagatgctggcagcagcagtcactgtttctccgagctgcagtctgaa
actgtgtaccgcatcagtgtgcactcgcgtctaggaacagtagagggtggtgctgttacc
atccttcaccccacagcaaccgctcctgtgagaattcaggttcctcctcgtctgcatccc
atacaaagagaagtgtgtcctgagatgacagtcagaaatcatgtgattaaaggattcaac
atgatggaagcattcggtctgactcagagagctcactctactattgagggtgtggcagct
gaacctttcatcttcaacaccttgcccagttacaccctctatagagacgtacagctgacc
cagagtacaggctttatccacccggctggattttctccagaacacaccatcagcatggcc
tttaggctcttgcaggattcacccagggaaccgttcgccctctggcagctcacggacaat
gacttccagcccaagatgggggtagtgctggaccctgagaagaagcttctgctgtacttc
agtctggactacagaggagagatacaggaactgacctttgaccagccacaagtccactcg
gttttctacggcagttttcataagatccatttgtcagtcagtcaggtgagcgtatcactg
tctgtagactgccagagggttggtgagcggcccgcacgtcccttgggaactttgcctact
gatggctttgagatgctgggaaaactagtgaggacacgtggacctcacagcggatctgca
gcttttcagctgcagtcctttgagattgtgtgcaacactacttgggcatcagaagacagc
tgctgtgatctgccctctcagagagacgatgagagctgtccagcccctgcttatgcttgc
acctgtaccaccgacatccctggagcacctggagacatcgggccacctgggagacctggc
cctcgtggggagaagggagaaaagggagagttgggccaaaagggtgaggtgggcccacct
ggtaaaccgggccctgaaggcggctttggcactcttggacctgctggtccacggggaata
gctgtaatgggcaaagtgggtccaccaggagcaagaggggaaaaaggagaaatcggaaga
ccagggagtcagggtttaccagggcctccgggtccaaaaggtgaagagggcatccctggt
cctaagggcaccagaggagtggagggtaacattggcagcccaggaatcacagggccaaga
ggtttccatggtatgcctggtcatccagggccagtaggagagagagggccactaggtcct
gtagggcccactggtcttcctggaagtaagggtgagagaggagagaagggcgagccacag
tcgcttgctgtgatcttccagcttgtttcacaggcctgtgaaaagcttgtgcacaatgaa
gtgctgaagttggatgcttttctgaatgagatgaatcgaaagccagtgcccatccaggaa
ccagtagcgccaccaggagagcctggtataccggggggaagagggtcacctggatccaga
ggccctcaggggcggcaaggaagcagaggggagtctgggagacccgggtaccctggtgag
cagggacgcagaggtatgccgggtgagaaagggtctccaggagcaaatgtgctgggacca
cagggaataaagggttttgcaggacctccaggtgaaagtaaaacaggggaaccaggtccc
aaaggtgaggatggtaaagcaggacctccaggtattccaggagcttcaggtctgcgagga
gaagtcggaccccctggtgtatgtgacagcagtggatgttatcaaggacccccggctgca
gaggacccatacctcggataccagccttga
DBGET
integrated database retrieval system
