Chanodichthys erythropterus (predatory carp): 137010858
Help
Entry
137010858 CDS
T10334
Symbol
col18a1b
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
cery Chanodichthys erythropterus (predatory carp)
Brite
KEGG Orthology (KO) [BR:
cery00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cery04147
]
137010858 (col18a1b)
00535 Proteoglycans [BR:
cery00535
]
137010858 (col18a1b)
00536 Glycosaminoglycan binding proteins [BR:
cery00536
]
137010858 (col18a1b)
Exosome [BR:
cery04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
137010858 (col18a1b)
Proteoglycans [BR:
cery00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
137010858 (col18a1b)
Glycosaminoglycan binding proteins [BR:
cery00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
137010858 (col18a1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Fz
Motif
Other DBs
NCBI-GeneID:
137010858
NCBI-ProteinID:
XP_067229355
LinkDB
All DBs
Position
21:1733549..1781442
Genome browser
AA seq
1606 aa
AA seq
DB search
MMFSRGLSLLLIVYVGPLNAFWWINQGATKAPTVDKNSGRTSEDKNIGDVGSDVIDVATG
FVQNWDQKPTVNWNNAVTMRTPGISLKRGHSKTGNDKSLSEEVKHEINVKGSSGDASGSG
LGSGPTLAQEGKKTTNLTGTWVSDSRISIISTPKDSTNCLPRGSDWPFCVSHGEVTFSVP
NFFNHTQAEDVVAVLNEWDWLLRSGCHHGLEWFFCLLLAPRCHQPSEKSGIVLLPCRTFC
EVLLDSCWTVLQERGLPVACHTLPEGPEPSQPCITVSNHKEESGVSLLQLIGNPPPEDIT
QVPGSSQTAYLFTKDTRTGQMARAHLPAHFYRDFSLVFHLKPSSDDAGVIFSITDSRQKI
MYVGVKLSAVEDGKRKVIFYYTEPDSDRSQEVASFEVIHKPLEWSRFSLAVNLDQVSFYE
DCDTEPKMVKFERSPDDLELETNSKIFVGHSGTEDPDQYQGLISELRVVGNPRAAERHCD
EAADDDDDYDASGGNGSGIEPLFDLEHDLPLPPQHAVRKPMLDTDDHQRETGFSGAKGDK
GLREEKRDQGDHGFTGPKRDCEANGTSVTGGACGQKGDRGEKGMKGSAGSGYPGPKGDRG
PPGPPGPPGPQGPEAELTESEGKIVKRVQGPVGPRGPGGPPGPKGPKGEPGKPGKDGKLG
SEGPRGFQGIPGSKGQKGEKGEGQQGPRGLPGLPGPPGPSISDRTTFADMEGSGWTGPSC
PPGPPGPPGPPGPPGPEWGIGSELQSTEIGPTGPPGQNGFPGRPGRPGQPGKPGPPGPPG
PKGDCGVLGLPGVAGEKQSSSSAFSFLSNWFPSWETSAAQGPKGSSGITGQEGLVGLPGP
MGPQGPPGPPGPPGPAFRITTNGTENEVALQYIPGVMGPPGPQGPQGIPGLPGTPGLPGI
AGQKGDEGQRGREGIPGLDGFPGKIGLKGERGWKGDKGEASRAVGPPGPPGPPGPPGQMI
YINGSEREEYGYAGPQGEPGVAGRAGFPGPMGPKGDQGDPGLPGDSTKGQKGEPGVIDIR
GSIFDLAEELSWLGAPGPVGPMGPEGQPGPKGEIGLPGRPGRPGLNGKKGAKGDSGGGYG
VGYQGPPGPPGPPGPPGPPAPGERLNGYDDRGSRFPYAIKGDKGERGTPGIPGLPGLTTT
FDIYAFKHEMKGELGPKGEKGEPGGGFYDPHRGGVQGPPGRPGPPGPRGESISGPPGPPG
PPGAPGIGYEGRPGSPGPPGPPGPPGSLLPDAYRPSQTISIPGPPGPPGPPGAPGRLHGV
MFLRSFDIMAASTIHHPEGTLIYVTDSRELYMREQDGVREVLLGEYTPFPRSRDKQLEAV
VRYSQDYPTTSSPQAPPQREDQYPVPHDPRYHPSYDPYNRHTFPHAFPPTDPQNSPSVDL
IHQHHPDSRKHIPSSHPDQSQSGYPDRRYDRTHHLRPVTEEAKISAHIHTSGPALHLIAL
NSPQRGGMRGIRGVDHQCFLQAQAIGLKGTFRAFLSSGLQDLHSIVRKIDRDRFPIVNLQ
DEELSSNWESIFSDSEGRLNDNVSIYSFDGRDVLKDDAWPEKIVWHGSSTRGNRQTDSYC
ETWRTDSPAVTGMASSLQDGYLLQQLPHSCASSFIVLCIENSYTAE
NT seq
4821 nt
NT seq
+upstream
nt +downstream
nt
atgatgttcagccggggcttgtctctcctgttgattgtgtacgtgggtcctcttaatgcc
ttttggtggatcaatcaaggtgccacaaaggcccctacagtggacaaaaacagtggaaga
accagtgaagacaagaacattggtgatgtagggtcggatgtcatagatgtagccacagga
tttgtgcagaactgggaccagaagccaactgtgaactggaataatgctgtcacaatgagg
acacctggcatctccttgaagcgtggccattcgaaaacgggtaatgataagtctttatca
gaggaagtcaaacatgaaataaatgtcaaaggttcctcaggtgatgccagtgggtcaggc
ttaggctcagggcccactttggctcaggaaggcaaaaaaacaaccaaccttacagggaca
tgggtttctgacagcaggattagtataattagcacccctaaggactctacaaactgctta
ccaagaggctctgactggcctttctgtgtatctcatggtgaagtcacattttctgtacct
aatttttttaaccacacccaggcagaggatgtggtagctgtattgaatgaatgggattgg
ctcctgcgttcaggctgccaccatggtttggaatggtttttttgcctactactggcacca
agatgccatcagccctctgaaaagtctgggatagtcctgctaccctgcaggactttctgt
gaggtgctgctggacagctgctggacagtcctacaggagaggggcctgcctgtggcctgc
cacaccctccccgagggaccagagcccagtcagccatgcataaccgttagtaaccacaaa
gaagagagtggagtctccctgctgcagcttattggaaaccctccgcctgaagatatcacc
caggttccaggttccagtcaaaccgcttacctcttcacaaaagacacaagaacagggcag
atggcacgtgcccaccttcccgctcatttctaccgagacttctctcttgtcttccacttg
aagccctcctcagatgacgctggggtcatcttctccatcacagactccagacaaaaaatc
atgtacgtgggggtcaagctctcagctgtggaggatggcaaaaggaaagttattttttat
tacacagagcctgattcagatagatctcaagaggtggccagctttgaggtgatacacaag
cctctggagtggagccgcttctctctggctgttaatctggaccaggtgtctttctacgag
gactgtgatactgagcccaagatggtgaagtttgagcgctcacctgacgacttggagctg
gagacaaactccaagatctttgttggacatagtggaactgaagacccagaccaatatcaa
ggcttgatctcagagttaagagtggttggaaacccacgggctgcagagcgtcactgtgat
gaagctgctgatgatgatgatgactatgacgcttctggaggaaacggaagtggaatagag
cctttgtttgatttagaacatgatttacccctgcctccacaacatgccgtgcgcaagcct
atgttggacacagatgaccatcagagagagacaggtttctctggtgctaaaggagataaa
gggttgagggaagagaagagggaccaaggagaccacgggttcacagggccaaaacgtgat
tgtgaagctaatgggacttcagtcacaggtggagcttgtggacagaagggtgatcgtgga
gagaaaggaatgaagggtagtgcggggtctggatatcctggccccaaaggtgatcgtggc
cctccaggaccacctggaccacctgggcctcagggtccagaagcagaattgacagaatcg
gagggtaaaattgtgaagagggtgcagggtccagtgggcccacgaggtccagggggccca
ccgggtccaaagggcccaaagggggagccaggtaaaccaggaaaggacggaaagcttggc
tctgaaggacctcgaggttttcaaggaatacctggttctaaagggcagaagggagagaaa
ggagaaggacaacaaggacctagaggtctacctgggctgcctggacctcctggaccctca
atctcagataggactacatttgcggatatggagggttctggatggacgggtccaagttgt
cctcctggtccacctgggcctcctgggccccctggacctccaggaccagaatggggaatt
ggatcagaattacagtccactgaaattggccctactggtcctccaggacaaaatgggttc
cctgggcgtcctgggcgtccaggtcaacctggaaaacctggtcctcctggtcccccaggc
ccaaagggagactgtggtgtgcttggcttgcctggagttgcaggggaaaagcaaagctcc
tcctctgctttctcttttctctccaattggtttccttcctgggagactagtgcggcacag
ggtccaaagggttcatcagggatcacagggcaggaaggtctggttgggcttcctgggcct
atgggacctcaaggacctccagggccacctggaccccctggacctgcattcagaattact
acaaatgggacagaaaatgaagttgctcttcaatacattccaggagtcatggggccacca
ggaccacagggtcctcaggggatacctggactaccgggcacacccggtttaccaggtatc
gcaggccagaaaggagatgaaggtcaaagaggacgagagggaatcccagggttagatggc
tttccaggaaaaatagggctaaagggagaaagaggatggaaaggtgacaaaggtgaagct
agtcgtgcggtagggcctccaggaccgccagggccacccggtcctccaggacaaatgatc
tatattaatggcagcgagagggaagaatatggatatgctggaccacagggagaacctggt
gtagctggtcgggcaggatttcctggaccaatgggtccgaaaggtgatcagggggaccct
gggctgccaggagactctactaagggtcagaagggtgaacctggtgtaatcgacatcaga
ggtagcatctttgacttggctgaagagctgtcatggctaggagctccaggaccagtggga
cctatgggaccggaggggcaacccggaccaaaaggtgaaataggattaccaggaagacca
ggtcgacctggtctgaatggaaaaaagggggcgaaaggtgattcgggtggagggtatggc
gttggctatcagggaccccccggtccgcctgggccacccggtcctcctggacctccagct
cctggggaaagactgaatggttatgatgatcgcggctcaaggtttccctatgctatcaaa
ggggacaagggtgaaagaggaacacctggcatccctggtttgccaggtctcactacaacc
tttgacatttatgcgtttaagcatgagatgaaaggtgagcttggtcctaaaggggagaag
ggagaaccaggaggaggtttctacgaccctcatcgtggtggagtacaaggtccacctgga
agacctggaccaccgggccctagaggtgaatctattagtggacctccaggtcctccgggg
cctcctggagccccaggaatcggttatgagggtcgcccaggtagtcctggcccaccaggt
ccacctggaccaccgggatcactgctgccagatgcatacagaccttcacaaacaatcagt
attcctggaccacctgggccacccggacctcctggagctcctggacgtttacatggggtt
atgtttttgaggtcttttgacatcatggctgcatcaactattcatcatccagaaggcacg
ctaatctatgtgacagacagcagagaactttatatgagagaacaggatggtgtcagagaa
gtcctgcttggagaatatacccctttccccaggagtcgggataaacagttggaagcagtg
gttcgctactctcaggactaccccactacttcctccccacaagctcctccacaacgagaa
gaccagtatcctgtgccacatgatcccagataccacccatcatatgacccatacaacaga
cacacatttccacatgcctttcccccaaccgatccacaaaactctccatcagtcgaccta
attcaccagcaccatcctgattccagaaagcacattcccagcagccacccggatcagtct
cagtctggctatcctgacagaagatatgaccgtacgcaccacctcaggcctgtcactgaa
gaagcaaagatttcagctcacatacacacatcaggtcctgcgctgcacctgattgctctc
aactccccccagcggggcggcatgcggggcattaggggtgtagatcaccagtgcttctta
caggctcaagcaatcgggctcaaaggaacattcagggctttcctgtcatccggcttacag
gatctgcacagtattgttcgaaagattgatagggatcggtttcctatagtaaatcttcag
gatgaggaattatccagtaactgggaatccatctttagtgactcagagggcaggttgaat
gataacgtgagcatctattcatttgatggtcgagatgttctcaaagatgatgcctggcca
gagaagatagtatggcatggatccagcactcgtggaaacaggcaaacagacagctactgt
gaaacatggcgaactgatagtcctgcagtcacaggcatggcttcctctctccaagatggc
taccttcttcagcagctgccacacagctgtgccagctctttcatcgtactgtgcatcgag
aacagctacactgctgagtga
DBGET
integrated database retrieval system
