Chanodichthys erythropterus (predatory carp): 137012021
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Entry
137012021 CDS
T10334
Symbol
col5a1
Name
(RefSeq) collagen alpha-1(V) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
cery Chanodichthys erythropterus (predatory carp)
Pathway
cery04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cery00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
137012021 (col5a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cery00536
]
137012021 (col5a1)
Glycosaminoglycan binding proteins [BR:
cery00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
137012021 (col5a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
ConA_2nd_BAM2
Motif
Other DBs
NCBI-GeneID:
137012021
NCBI-ProteinID:
XP_067231054
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All DBs
Position
22:11598798..11709704
Genome browser
AA seq
2038 aa
AA seq
DB search
MDTPIRWKVKRRFKEVRLSVLLVFLMFVTSRVSAAEPADLLKILDFHSLPEGVTKTTGFC
THRKSSKGPDVAYRVTKDAQLSAPTKQLYPLSVFPEDFSILATVKPNKGSQSFLLSVYNE
QGIQQLGLEVGRSPVFLYEDHLGKPGPEDYPLFRGVNLADGKWHRVAISVHKQSITLILD
CKKKVTRTLSRSPHPIIDTKGIVVFGTRILDEEVFEGDIQQLMIVSDHRAAFDYCEHYSP
DCEVPAPEQPQNQDPNTDEYNTEDNYYYEYPYYEDMDAEKNGETTTDETTGTETEDLTVS
VPDSGRVVTSVITSGTGGSSSSSSSSSSSSSSSSTTNTGEDPYDGYDGYGNGYDTYYDES
TSRPDGSRTITITSTGTSTGGEVDIGLGEVDLGLGGDLDRRIITSSSSSSSGGGGSGRVH
STVTIINGTSGSGSSTRISSGSSSSSSSSTGSGSSSRISTGSGSGSSSSSRISIGSGSSS
SSSSGVSTGSSSSSSSSSTSVGGGYDDTQYGEGYDLTYGEGYGEGYGEGDYTVGGGGGSS
STSTSVSVGGGSVSVGGGSVSSSGSVGGGSVSAGASAGAGSVATGGQGGIGGEADSIDID
KFKEESLTDYTDAELESMYNYEDLYPDSDKELPAETVDTYGQVDGLRGEKGQKGEPAIIE
PGMLVEGPPGPEGPTGLPGPPGSTGPPGSAGEPGERGLPGRPGLPGADGLPGPPGTVLML
PFRMSTGGDGGQKGPAVSAQEAQMQAIMQQARLAMRGPTGPMGLTGRPGPLGPPGVPGLK
GESGESGPQGPRGPLGSAGPPGKPGRRGRPGSDGARGMPGQTGPKGDRGFDGLAGLPGEK
GHRGETGPQGPPGPPGEDGERGDDGEVGPRGLPGEPGPRGLLGPKGPQGPPGPPGVTGMD
GHPGPKGNIGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPTGKPGLPGMPGADGPP
GHPGKEGPSGEKGNMGPPGSQGPIGYPGPRGVKGADGVRGLKGNKGEKGEDGFPGFKGDM
GIKGDRGELGAAGPRGEDGPEGPKGRSGLPGDPGPLGPSGEKGKLGVPGLPGYPGRQGPK
GSQGFQGFQGASGEKGTRGTPGKPGPRGQRGPTGPRGERGPRGPTGKAGPKGNSGSDGPP
GPPGERGSLGPQGPAGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQ
GPTGETGPMGERGHPGPPGPPGEQGLPGPAGKEGAKGDPGPAGSAGKDGPPGLRGFPGER
GLPGPVGSAGLKGSEGPPGPPGPAGSPGERGPAGPAGPTGLPGRPGPQGPPGPAGEKGGP
GEKGPQGPAGRDGIQGPVGLPGPAGPIGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPT
GPQGPSGQPGPPGADGEQGPRGQQGLFGQKGDEGSRGFPGPPGPVGLQGLPGPPGEKGET
GDVGQMGPPGPPGPRGPSGPPGADGPQGPPGGIGNPGAVGEKGDSGEAGEPGPQGDVGPP
GPRGERGEKGEAGPAGSAGPPGPKGPPGDDGPKGSPGPSGFPGDPGPPGEPGPSGLDGAP
GDKGDDGEPGQPGSPGPTGETGPTGPPGKRGPPGPAGPEGRQGEKGAKGESGLEGPAGKT
GPVGPQGSPGKPGPEGLRGVPGPVGEQGLPGAPGPDGPPGPMGPPGLPGLKGDTGIKGEK
GHPGLIGLIGPPGEQGEKGDRGLPGPQGSSGPKGDTGIAGPSGPIGPIGPPGLPGPPGPK
GAKGSSGQTGPKGETGIPGPPGPPGPPGDVIHPLPIQSSPKRAKRNIDASQVMDDAADAN
YKDYEDGMEEIFGSLNSLKLEIEQMKHPLGTQSNPARTCKDLQLCHPDFPDGEYWIDPNQ
GCSRDSFKVYCNFTAGGESCIFPDKKSEGARLTSWVKENPGSWFSEFKRGKLLSYVDAEG
NPIGVVQMTFLRLLSATARQNLTYNCYQSVAWHDQDLDNYDKAIRFLGSNDEEMSYDNNP
YIRAAVDGCALKKGYEKTILEINTPKVEQVPFVDIMFNDFGGATQKFGFEVGPACFIG
NT seq
6117 nt
NT seq
+upstream
nt +downstream
nt
atggatacacctatcagatggaaagtaaagcggaggtttaaggaggtgcggctgtcggta
ctcctagtattcctgatgtttgtcacctcacgagtcagcgcagctgagccagccgatctc
ctaaagattttagattttcacagtttgccagagggtgtaacgaaaactacaggcttctgc
acacacaggaagtcatcaaaagggcctgatgtcgcctacagagtcacaaaagatgcacag
cttagcgctcctacgaaacaactctaccccttgtctgtatttcctgaggacttctccatc
ttggcaacggtgaagccaaataaaggcagtcagtccttcctgctgtcggtgtataatgaa
cagggcatccagcaactcggtctggaagtcggacgctctcctgtcttcctgtacgaggat
cacctgggcaaaccaggcccggaggactacccgctcttcagaggggtcaacttggcagac
ggaaagtggcatcgtgtggcaatcagcgttcacaaacagagcattactctgattttggac
tgtaagaaaaaggtaacacggacactatccagaagccctcatcccatcatcgacaccaaa
ggcatcgtggtctttggaacgcgcatcctggacgaggaggtctttgagggtgacatccag
caactgatgattgtatcggaccatcgtgctgcgttcgactactgtgagcactacagcccc
gactgtgaggttcctgcccctgaacagccccagaatcaagatccaaacactgatgaatat
aacacagaggataactactattatgaatatccctactatgaggacatggatgcggaaaaa
aatggagaaacaacaaccgacgaaacgactggaaccgaaactgaagacctaacggtgtct
gttccggatagcggtcgcgtggttacctcagttatcactagtggaacaggaggctccagc
agttcgagtagctcctcctcctcctcttcatcctccagctcgaccaccaatactggcgag
gacccgtacgacggctacgatggttacggaaacggatacgatacatactatgacgagtcg
acctcaaggcctgatggctcacggaccatcacaatcactagtacaggcacaagtactggc
ggagaagtagatattggactgggtgaggtggatctgggattgggaggagacctggacagg
cggataatcacatcatcgtcttcatcatcatcaggaggaggaggaagtggaagagtgcac
tcaactgtcacaatcattaatggaacctccggctccggctctagcaccagaatcagttct
ggctccagctccagctccagctccagcaccggttctggctccagttccagaattagtact
ggctccggttccggctctagttccagttccagaatcagtatcggctccggctccagctcc
agctccagctctggagttagtaccggctccagctccagctctagctctagctctacctca
gttggtggtggttatgatgacacccagtacggtgagggttatgatctgacctatggagag
ggatatggagaaggatacggagagggagattataccgtgggaggaggaggcggcagcagc
agcaccagcacttcagtttccgttgggggcggatctgtttctgttggaggcgggtctgtt
tcttcaagcggctcagttgggggtggatccgtcagtgctggggccagcgcaggggcgggg
tctgttgccacaggaggacagggaggaattggcggagaagcagattccatcgatattgac
aagtttaaggaggagtctctcacggattacaccgatgcagaactggagagcatgtataat
tatgaagatctatacccagacagcgacaaagagttgcctgcagagaccgtggacacctat
ggacaggtggatggactgagaggagagaagggccagaaaggagagcctgcgatcattgaa
cccggaatgctggtcgaaggcccacctggtccagagggtcctacgggtctccccggccct
ccaggttcaacgggacccccaggtagtgctggagagcccggtgagaggggtcttcctggt
cgccctggtctgcctggagccgatggtcttccaggacctccagggactgtcctgatgttg
cctttccgcatgagtacaggaggggacggtggacaaaaaggtcctgctgtttctgcccaa
gaggctcagatgcaagccatcatgcagcaggccaggctggcaatgaggggtccaaccgga
ccgatgggtttgacaggccgtcctggtcctctgggtcctcctggtgtgcctggactgaaa
ggagagtctggagaatcaggacctcagggtcctcgtggtccactgggatccgcaggccct
cctggaaagcctggtagacggggtcgacccggctcagatggagccagagggatgcctgga
cagacgggacctaagggtgacagaggattcgatggtcttgctggtttgcctggtgaaaag
ggtcacaggggtgagacggggcctcaggggccgcctgggcctccaggagaggatggagag
agaggcgacgatggtgaggtcggacccaggggtctgcctggagaaccaggtcctcgtggt
ttgttgggccccaaaggtccccaggggcctccaggacctcctggtgtgactggtatggac
ggacatcctggacctaaaggaaacatcggtcctcaaggtgagccaggtcctcctggacaa
caaggcaaccccggagctcagggacttccaggtccacagggagcaatcggacctccagga
gagaagggtcccactggaaaaccaggcttaccgggaatgcccggagccgatggacctcca
ggccacccaggaaaagaagggccgtcaggagagaaaggaaacatgggacctcctggttct
caagggccaatcggatatcctgggcctcgaggtgtcaagggtgctgatggagtccgcggg
ctgaaaggaaacaagggtgaaaagggagaagacggatttcctggatttaagggagatatg
ggcatcaaaggggacaggggagaacttggtgctgctggacccagaggtgaagatgggcct
gagggacccaaaggaagatctggtttgcctggagatcctggaccactcggaccatcagga
gagaagggtaagcttggtgtacccggtttgccaggctatccaggaagacaaggccccaag
ggttctcaaggattccagggattccaaggagccagtggagagaaaggcacaaggggtaca
ccagggaagccgggcccccgaggacagagaggacccacgggaccccgtggtgaaagaggg
cctaggggaccaacagggaaagctggaccaaagggtaactcaggaagcgatggcccccca
ggaccacccggtgaacggggttcattgggaccacagggacctgctggattccccggccct
aagggtccacctggacctcctggaaaggatggactgcccggacaccctggccagagagga
gagactggtttccaaggtaaaaccggacctcccggacccccaggtgtagttggacctcag
ggaccaacaggtgagactggaccaatgggagagcgaggtcatcctggacccccaggacca
cccggtgaacagggtcttcctggacctgcaggcaaagagggagcaaagggagatccaggt
ccagcagggtcagcgggtaaagacggacctccaggactcagagggttcccaggcgagaga
ggtttaccaggccctgtgggatcagcaggtttgaaagggagtgaaggacctccagggcca
cccggacccgctggttctcctggtgaacgtggtcctgctggcccagctggtcctaccggc
ctcccgggccgacctggacctcaaggacccccaggccccgctggagagaaaggtggacct
ggtgagaaaggacctcaaggcccagctggtagagatggtattcagggacctgtggggctt
ccaggcccggctggacccatcgggcccccaggagaggatggtgataagggcgagattgga
gagccaggacagaagggaagcaaaggtgacaagggcgagcagggtcctccagggcctact
ggtccccaaggtcctagcggtcagccaggtcctcctggtgctgatggagagcaaggtccc
agaggtcagcagggtctttttggacaaaagggagatgagggctcacgaggcttcccagga
ccacccggacctgtcggccttcagggcttgcctggaccccctggtgagaaaggagagact
ggtgatgtcggtcaaatgggtccacccggtccaccaggccccagaggcccctctggaccc
ccaggagctgacgggccgcagggacctccgggaggtattggaaacccaggagcagtagga
gagaagggagactctggtgaagcaggagaacctggcccacagggagacgtcggccctcca
ggtccaagaggagagcgaggagaaaagggagaggccggacccgctggttctgctggtccc
ccaggaccaaaaggaccaccaggagatgatggtcctaaaggaagtcctggtccaagtgga
ttccctggtgatcctggtcctcctggagagccaggtccatctggtttggatggtgctcca
ggtgataagggtgacgatggagagcctggtcagccaggatcccctggacctactggtgaa
actggccctactggtcctccaggaaagagaggacctcctggacctgctggacctgaagga
agacagggagagaagggtgccaagggtgaatctggtctggagggtccagctggtaagacg
ggtccagttggccctcagggaagccctggaaaacctggtcctgagggtctgagaggtgtg
cctggaccagtgggagaacaaggactgcctggtgctcctggacctgacggaccccctgga
ccgatgggtcctcctggcctgcctggattgaagggagatactggtattaaaggtgaaaag
ggtcatcctggtctcattggactcattggacctccaggagaacagggagagaagggagac
agagggctgccgggtccacaaggatcttcaggacctaaaggagacactggtattgcaggt
ccctctggacctattggacccattggaccacctggtctcccgggtcctcctggtcctaaa
ggtgctaaaggatcatctggtcagactggcccgaagggtgaaactggaataccgggacct
cctggacctcctggtccacctggtgatgtcattcaccctctgcccatccagtccagccca
aaacgggcaaagaggaacattgatgccagccaggtgatggacgacgctgcagatgccaac
tacaaagactatgaggacggcatggaggagatattcggctctctgaactctctcaaactg
gagattgaacagatgaaacacccgctgggcacacagagtaaccccgcccgcacctgcaaa
gacctacagctgtgccacccagatttcccagatggtgaatactggattgatccgaaccag
ggctgctccagagactctttcaaagtttactgtaacttcacagcaggtggcgagagctgc
atcttccctgataaaaagagcgaaggggccaggctcacctcttgggtgaaggagaatccg
gggtcgtggttcagtgaattcaaacgtggtaaactgctctcgtacgtggacgcggagggc
aatccaatcggagtggtgcagatgacattcctgcgtttactcagtgccacggctcgacag
aacctgacctacaactgttaccagtcggtagcttggcatgaccaggatcttgacaattac
gataaagccatccgcttcctgggctccaacgatgaggagatgtcttacgataacaacccg
tacatcagagccgccgtcgacggctgcgcgttgaaaaagggctatgaaaagactattctt
gagatcaacacacctaaagtggagcaggtaccatttgttgacattatgtttaacgatttc
ggcggagcaacgcagaagttcggctttgaggtcggaccggcctgcttcatcggctaa
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