Chanodichthys erythropterus (predatory carp): 137012148
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Entry
137012148 CDS
T10334
Symbol
setx
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
cery Chanodichthys erythropterus (predatory carp)
Brite
KEGG Orthology (KO) [BR:
cery00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cery03021
]
137012148 (setx)
Enzymes [BR:
cery01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
137012148 (setx)
5.6.2.5 RNA 5'-3' helicase
137012148 (setx)
Transcription machinery [BR:
cery03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
137012148 (setx)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SEN1_N
AAA_19
UvrD-helicase
AAA_30
AAA_22
AAA_16
ResIII
NAT10_TcmA_helicase
NPHP3_N
nSTAND3
DUF6428
Motif
Other DBs
NCBI-GeneID:
137012148
NCBI-ProteinID:
XP_067231335
LinkDB
All DBs
Position
22:complement(32749030..32836910)
Genome browser
AA seq
2348 aa
AA seq
DB search
MDKCLWCTKALKAEGDVAIVAILHRYSSGQLSAEMMATLNEDLNCCMECVMEYHRARDKV
PELHKRLWEKEKARLLHILGYYLDKELEEDDLFIIEDDHEKPVSMISPAEFHDRLCCPLF
EVLKYPYLLCYRDLCDLVVKALCKLQDLNSSLIVFEKYQGTYLLLVHPNEQVRRWAIDAA
KTLKSVDRDSFYDLQEIFNCMFYVIELGISLDFPDLDPEAYAGGTVKMLPSHLYDSQNKK
NYWLGICMLLTQLSAEAMDSLFMGEFNIPLCILNTMDRLKNEDNPASDPFWPALHCFMVI
LDRLGSKIWGQVDPSMAFQTITGAASYDAEIRSIQQKTIGRMVKEEPEYDDNVVTCSQMV
YDCYASEKPNQASGPTSNSGICSNYVIYEDMQSLVKVLDSEMGRSMRVYGSTFLWFIPFV
RSIMELPELNASYISEVIHFLCDKILANRHVLTGQTSSCDKVTEFFTRILIQIVELHSTE
GRMGILSRCAPKWVEVIVMCIVLSDEPHGPPDKMGGIHSVSSTSYNLGIVGRLPTYGGGI
GAIILGCMTLIRLLLKEGIKTGSVPCATHFLNLLNKQLRGATNKRWNLTHSESIELQRCL
KSVVRSMQEKPASASSVVPSPSTSSLEAATNTVISRKSMPTLKPQHEDQKAGPSRACGSS
FIKEEPIWNDENCFFDKELCSGLENIMKAKKEPPAPMLISEMRPAVELAQIKPDLGKLQE
IRSKLNNQNLSKIEAITKRRPSESLKPVHLASAKEDLGFRAVEGDDDEDDEPLNVRRARL
MKSSGYKIESSDSEVDSSDVGKTHARSTGNSKENVESSTIVISDDEDSDNDERPNEILRS
IDKECTMKNKSPEHPVLPESPGRDYDDLSESQVFEFETQQYVASAWDYSEFEAAVLTKKS
DQTLKPQVEKAPHEASPSGSSDTEMIPDEDIERACQQAEEKIRQRPQPQGPADSCALSKE
SSTAESWDKFVKPKPVQVKSTKTIPSEKKDILQPKKPLIIDALAQKVRRNPWKRSSPVLD
MEEPSSSTTPSSSDMQSSSPSSSSVSSPYFSASTSRGTPAIVPPKKVRKLAEPESTAERL
GLKKKERKAFDLSQRSLDCVAKLRCHGQKVQVKPQQKTKRVCRPTKTSPQKRIVKGNKKL
MGSQDIQFFRQSREKHQRPATGAITTLAPKPARTNQPGELPSSKPTVECKGDGDLFTRFH
PDPDQQQDNEKTVSESSNSRGDGVGSNRTIIESKYFQASEPADVNIEEEKATHASHEEVD
DEWMFLTQMEPTDMELCSQMEQIEDENEELFLTQRDPVDMDLDTDSESDIPGQPVLTHKP
PHAPLSITMCNDEKVADHLFLKPGMPPMSQKKAKPSTTKIYNPSSRSASLVLEMEKGAKP
PPAANVAKAKIPRPPPAIPPPKTFKPVPPPQFPKPFPSQQTPLPLGPKLVTSTKISSTSE
PPSYKVYQRPEAPVHKPAPPIDQSPKFDLSILTQAILKWDYGMLDNYKSFGSPNDLCQLP
LKEVPVKFPSYLEYFNTLYPLLLNNAFEEMANEWLKEGRVKLNLKVQGIEYSNRTASASF
TANISQESDMKQRYPKEDDLVLLWLPDNTGAYAHDEPNFHEAHPHFGYVSRSNVSRGPDS
MSTLNLTIQTHGNVSSVNAQPVLCEVIGSLISIFREFRALCSLRNGSMLRPVLAPHVSYF
THNLHSPPDLDVPEYNRDQARAISCGLAMIQRKEKTPKFLLIHGPPGTGKSKTIGGLLYK
LLSSGNNSAGSAGNFHSKTRRTRVLLCAPSNAAIDSLMKKVIVIFKEKCKNRNAPQGNCG
DINLVRLGSERTISKSLKLFSLDQQTKARAQRAQQVVEADVQRRKEQLDQNIDNISQRCA
KTPKDSTDFKRLMEQKRELLKEREGLSRQSKECRSRRQESQAFVLQNAHVICCTLSTSGS
IVLENAFRRLGHEPFSCVIIDEASQAKETETLIPMLYRSPSIILVGDPNQLPPTVVSQKA
KEFGYDQSLMARLCKNLHPSNPQLSPILLLSVQYRMHPDICEFPSKYIYNSALQNDCETA
QKRCSFTWPFKPYKVFDVTDGREMKERDSFVNPKEVRLVLLLLKLLGEKQSVRVGVITPY
NAQKQRIVEAIRGSGINKQLQVEIDTVDGFQGREMDCIIVSCVRASSKMGSIGFVGNRQR
MNVTITRARFSLFILGHLRTLREQSDWGALIEDAGRREAIIKTTQRDFESDVKKILKRDP
PTRSLSHPPLGRSSTATAPVPHSPMEIEPGPAPHSHRDMSSGQAQQSMPRLIPLECPKDP
RNSDRPTDPRFTERWPIREQAQDRRGLPAPRLPTHRANSYDADSQSTGQSSRYSSKHRGF
SPPRRHRR
NT seq
7047 nt
NT seq
+upstream
nt +downstream
nt
atggataagtgcctgtggtgtaccaaggccctaaaggcggagggagatgtggcgatcgtt
gccatcttgcatcgctacagttcagggcagctgtctgcggagatgatggccactctgaat
gaggatctcaactgctgtatggagtgtgtgatggagtatcatcgagccagagacaaggtc
cctgaactgcacaagcgtttgtgggaaaaagaaaaggctcgactcctgcatattttggga
tactatctggacaaggagcttgaagaggatgatctatttatcattgaagatgatcatgaa
aagccggtgtcaatgatctctcctgcggaattccatgaccgtctctgctgcccactgttt
gaagttttgaagtatccgtacctgctttgctaccgtgatctgtgtgatctggtggtaaag
gccttgtgcaagttgcaggatttgaatagttctttaattgtgtttgagaagtatcaagga
acatatctgcttcttgttcatcccaatgaacaggtgcgccgttgggcaatcgatgctgca
aagacattgaagagtgtggaccgggacagcttctatgaccttcaagagattttcaattgc
atgttttatgtcattgagcttggaatatctttggattttccagacttggatcctgaggct
tatgcagggggcacagtaaaaatgctgccgtctcacctctatgattcacaaaataagaag
aactactggctaggcatctgtatgttgctaacgcagctcagcgctgaggcaatggactct
ctgttcatgggagagtttaacatcccactttgcatactcaacacaatggataggttgaaa
aatgaggataacccagcttctgacccattctggccagccctccactgttttatggtaatt
ctggaccgacttggttctaagatctggggtcaggttgaccctagtatggctttccagact
atcactggagcagccagttatgatgcggaaataagaagcatccagcaaaaaaccataggc
aggatggttaaagaagagccagaatatgatgacaatgtggtgacttgcagtcagatggtg
tacgactgttatgcctcagaaaaaccgaaccaagcatctggtccaacatccaacagtggt
atttgcagtaactatgtgatctatgaggatatgcagtccttggtcaaagtgcttgattct
gaaatgggccggagtatgcgtgtatatggaagcacttttctgtggtttattccatttgtg
cgttccataatggaacttccagagctcaatgcctcatatattagtgaagtcatccacttt
ctatgtgataagatactagctaatcgacacgtactgaccggacagacaagttcttgcgat
aaagtgactgagttcttcacccgtatcctcattcaaattgttgagctacactctacagaa
ggacgtatgggaatactttctcgctgtgcccccaagtgggtggaagtgattgtcatgtgc
atcgtcctatcggatgaaccacatggaccaccagacaagatgggtgggattcacagcgtc
agttcaacctcatacaatcttgggatagtagggagactgcctacatatggaggtggtatt
ggtgccataattctaggctgtatgacactgattcgactgctgctgaaagaaggtataaag
acgggatctgtcccatgcgctacccattttttgaatttgcttaacaagcagctgcgtgga
gctacaaacaaacgatggaatctaacacattctgaatctattgaacttcaaaggtgttta
aaaagtgtagtccggtcgatgcaagaaaaacctgcttctgcatcctctgttgttccatcc
ccatctacatcatcattagaggcagctacaaacacagttatttccagaaaatcaatgcca
accctgaaaccacaacatgaggaccagaaggcaggtccaagcagagcctgtggctcctct
tttattaaagaggagccaatttggaatgatgaaaattgcttctttgataaagagttatgc
agcggtcttgagaacatcatgaaggctaaaaaggaacctcctgcccccatgttaatttca
gagatgagacctgctgttgagttggcacaaattaaaccagatctgggtaagctgcaggaa
attcgatccaaattaaataaccagaatttgtcaaagatcgaagccattaccaaaagaagg
ccgagtgagtccttaaaacctgttcacttggcatcagctaaggaggatcttggttttaga
gctgttgagggggatgatgatgaggatgatgaacccctcaatgtcagacgagcccgattg
atgaaatcctctggctacaagattgaatctagtgactctgaagttgactctagtgatgtt
ggaaaaacgcatgccaggtccacgggcaactctaaggaaaatgtagagtctagtaccatt
gttatctctgatgatgaagattctgataatgatgagaggccaaatgagatcctgaggtct
attgacaaggaatgtacaatgaaaaataaatctccagaacatcctgttttgcctgagagt
ccagggcgtgattatgatgatctcagtgaatcgcaagtgtttgagtttgagacccagcaa
tatgtggcatctgcctgggattattcagaatttgaggcagcagtattgacaaagaaatca
gaccaaacactcaaaccacaggtggaaaaagctcctcatgaagcatctccctcaggtagt
tcagatactgaaatgattccagatgaggacattgagagggcctgtcagcaagcagaagag
aagatcagacaacgaccgcagccacaagggccagcagattcatgtgcattgtccaaagaa
tccagtactgcagaaagctgggacaaatttgtcaaaccaaaacctgtgcaggttaaaagt
acaaaaacaattccatctgagaagaaagacattttacagcctaaaaagccattgataatt
gatgcccttgctcaaaaagtcaggcgcaacccatggaaacgcagctccccagttctggac
atggaagaaccatcctcgtcaactactccatcctcatctgatatgcaatcttcctctcca
tcctccagttccgtttcctctccttatttttctgcttccacctcacgtggcacccctgcc
attgttcctccaaagaaggtgcgtaaacttgctgagccagaatcgacagcagagcgcttg
ggattaaaaaagaaggaaagaaaagcctttgatctttctcagcgctccctggattgtgtg
gctaaactgaggtgccatggccagaaagtgcaggtgaaaccacaacagaagacaaagcga
gtgtgtcgacccactaagacctctccacagaaacgtatagtaaaaggcaacaagaaacta
atgggatctcaagatattcagtttttcaggcaaagtcgcgagaagcatcagaggccagca
acaggagcaatcacaacattagctcccaaaccagcaaggacaaatcagccaggtgaacta
ccctcatcaaaacctacagttgaatgcaaaggggatggtgatctctttacccgctttcat
cctgatcctgaccagcagcaggataatgaaaagactgtatcagaatccagtaattctaga
ggcgatggggttggaagtaataggacaataatagaatccaagtactttcaagccagtgag
cctgctgatgtcaacatagaagaagaaaaagccacccacgcttcacatgaggaggttgat
gacgaatggatgttcctcactcagatggaacccaccgacatggaactgtgctctcaaatg
gagcagattgaggatgaaaatgaagaactctttcttacccagagagatcctgttgacatg
gaccttgatacagatagtgagtcggatatcccaggtcaaccagtgttgacgcataaacct
cctcatgcccctctttcgattaccatgtgtaatgatgaaaaagttgctgatcatttgttc
ttgaagcctggcatgccaccaatgtctcagaaaaaggccaaaccatctaccacaaaaata
tacaaccccagctcccgcagtgcctcactagtccttgaaatggaaaaaggagccaagcct
cctcctgctgctaatgttgctaaagcgaagattccccgaccacccccagctataccaccc
cctaaaacattcaagcctgtgccgcctccacaattcccaaagccatttccttcacaacaa
actcctctgcctctgggccccaagttggtcactagtactaaaataagctctacttcagag
ccaccatcttacaaggtataccaaagacctgaggctccagttcataaaccagcacccccg
attgatcaaagtccaaagtttgacctttcaatcttgacccaagcaatccttaaatgggat
tatggaatgcttgacaattacaaatcatttgggagtccaaatgatctatgccaactgccg
ctgaaggaggtgccagttaagttccctagctacctggagtacttcaacaccttgtacccc
ctgctgctaaataatgcatttgaagagatggctaatgaatggctcaaagagggcagggtc
aagcttaacctaaaggtccagggaatagaatacagtaatcgcacagctagcgccagcttc
acagcgaacatttctcaggaaagtgatatgaagcaacggtacccaaaagaagatgacctt
gtgctgctttggctgccagacaacactggggcatatgcccatgatgaaccaaatttccat
gaagcacatcctcattttggttacgtgtcccggtccaatgtttccagaggtccagattcc
atgtcaaccctaaacttgacaattcagacccatggtaatgtatcttcggtgaatgcccaa
cctgtgctctgtgaagttattggatctttgatcagcatattccgggagttccgtgcactg
tgttcactgcgaaatggatcaatgttgcgtcctgttcttgctccacatgtgtcttatttc
acacacaatctgcatagcccaccggatctggatgtaccagagtacaacagggaccaggca
agagcaatatcctgtggtcttgccatgatacagagaaaggagaagaccccaaaatttctc
cttattcatggtcctccaggaactgggaagagtaaaaccattggtggccttttgtacaaa
ctactgtcttcgggtaataacagtgctggttctgcggggaactttcactccaagactcga
aggacacgcgttcttctctgtgcaccctctaacgctgccattgacagtctgatgaagaaa
gtcattgtgatcttcaaagaaaaatgcaaaaacagaaatgctcctcaaggtaactgcggt
gacataaacttggtaagactgggaagtgaaaggaccatctcgaaatcactaaaacttttc
agccttgaccagcagactaaagctagagcacagcgagcccagcaagttgtagaagctgat
gtacaaaggcgaaaggagcaactggaccagaatattgacaatatctcccagcgatgtgca
aagacaccaaaggattctactgatttcaagaggttgatggagcagaagagggagcttctg
aaagagagagaaggactgagtcggcagagtaaagagtgtcgtagtaggcgtcaagagagt
caagcatttgtgctgcagaacgctcatgtgatctgctgcactctcagcaccagtggaagt
attgtcctcgagaatgcattccgtcgactgggacatgaaccatttagctgtgttatcatc
gatgaggctagtcaggccaaagaaacggagacgctaattcccatgctttaccgaagtcct
tccataatccttgttggtgatcccaaccagcttccaccaacagttgtctcccagaaagca
aaggagtttggctatgaccaatctcttatggcaaggttatgcaagaatcttcatccatca
aacccacaactctcgcccatcctcctcctcagtgtgcagtatcgcatgcacccggacatc
tgtgaattcccctccaagtacatctacaacagtgctcttcagaacgactgtgagaccgct
cagaaacgctgttccttcacctggcccttcaagccttacaaagtgttcgacgtgacggat
gggagagagatgaaggagagagattcatttgtgaaccccaaagaggtccgtttggtcttg
ctgctgttgaaactgctgggcgagaagcagtcagtgcgagtgggtgtcatcacgccctac
aatgcccagaaacaacgcatagtggaggccattcgaggttcaggcatcaacaaacaactt
caagtggaaatagatactgtcgacggctttcagggcagagaaatggactgcatcattgtg
tcttgtgtaagagctagcagtaaaatgggttccattgggtttgttggaaatcggcagagg
atgaacgtaaccatcaccagagccagatttagtctctttatactgggacatctacgcaca
ctcagggaacaaagtgattggggagcgttgattgaggatgctgggagacgggaagctata
atcaaaacaacgcaaagagattttgaaagtgacgtcaagaagattcttaaacgagatccg
ccgactcgcagtctctctcatccccctcttgggagatcaagcaccgcgaccgcacctgtt
ccgcattctcctatggaaatcgagcccggccccgcgccacactcccaccgtgacatgagc
agcggtcaggcgcagcagtctatgccacgtctgataccattggaatgccctaaagaccca
cggaacagtgacaggcccacagatccacggtttacagagcggtggccaatcagagaacag
gcacaggacaggcggggcttaccggcgccacgcctcccaacacacagagctaattcatat
gatgctgactctcaaagtacaggccaatcttccagatactcttcaaaacaccgcggtttc
tcaccgccaagacgacacaggagataa
DBGET
integrated database retrieval system
