Chanodichthys erythropterus (predatory carp): 137012355
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Entry
137012355 CDS
T10334
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
cery Chanodichthys erythropterus (predatory carp)
Pathway
cery03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cery00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137012355 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cery03041
]
137012355 (ddx46)
Enzymes [BR:
cery01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
137012355 (ddx46)
Spliceosome [BR:
cery03041
]
Complex A
U2 snRNP components
U2 related factors
137012355 (ddx46)
Complex B
137012355 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
137012355
NCBI-ProteinID:
XP_067231594
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All DBs
Position
22:complement(10556635..10572926)
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AA seq
1037 aa
AA seq
DB search
MGRESRHYRKRSSSRARSGSRSKSRSPDSKRSKKDERAGSRTRERSRRERTRSRERRRSR
SRDRKRPRRSRSRDRRRASRERRRSKSRSRGRSKEKSENGEQSADKKKVKEEKEKEEEKA
EDQDFDQNTLEEEMRKRKERVEKWREEQRKKAMENIGEIKKELEEMKQGKKWSLEDDDDD
DEETQAPAEPDEDEQEKDAADEAEEAALMEEETGEELDPLDAYMEEVKEEVKKFNMGTMK
GGNDKHKGGMSVTKVVTVVKTKKMLHSSKKKGELMENDQDAMEYSSEEEVVDLQTALTGF
QTKQRKVLEPVDHQKIEYESFRKNFYVEVPELARMTPEEVNEYRLELEGIIVKGKGCPKP
IKTWVQCGISMKVLNAMKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM
FRHILDQRPLGEGEGPIAVIMTPTRELALQITKECKKFSKSLGLRVVCVYGGTGISEQIA
ELKRGAEIIVCTPGRMIDMLGANSGRVTNLRRATYVVMDEADRMFDMGFEPQVMRIVDNV
RPDRQTVMFSATFPRTMEALARRILSKPIEVQVGGRSVVCSDVEQHVIVIEEEKKFLKLL
EILGHYQEKGSVIIFVDKQEHADSLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKNGAC
RLLVATSVAARGLDVKHLILVVNYNCPNHYEDYVHRAGRTGRAGNKGFAYTFITADQVRY
SGDIIKALELSGSPVPPELEQLWTGFKEQQKAEGKSIRSSSGFSGKGFKFDETEHALANE
RKKLQKAALGLHDSDDDDAALDIDEQIESMFNSKKRVKDFSAPGGAAGGGSGGVSGAVTA
VSGLSTPSAGNIQKLEIAKKLAARIQVQKNLGAEAQDVMQQATNAILRGGTMIAPSVSAK
TIAEQQAEKINAKLNYTPVEKLEEDRQAAEAAETVKRYEEELEINDFPQTARWKVTSKEA
LQRIGEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRLIKEELI
RLQNSYQPTSKGRYKVL
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atgggaagagagtcacggcactacaggaagcgctccagctcgagggcgaggtcaggcagc
aggtcgaagagccggtcgccggactccaaacgctccaagaaagatgagcgggccggatca
cgcacccgggagcgcagccggagggaacgcacgcgcagcagagagcgccggagatcccgc
tccagagaccgcaagagacccagacgttccaggagtcgggacaggagacgcgcgagccga
gagcgccggaggagcaagagcaggagcagagggaggagcaaggagaagtcggagaacggt
gagcagtcagctgacaagaagaaggtgaaggaggagaaggagaaggaggaggagaaggct
gaagaccaagacttcgaccagaacaccctggaggaggagatgaggaagaggaaagagcgg
gtggagaagtggagggaggagcagaggaagaaagccatggagaacatcggcgagatcaag
aaagagctggaggagatgaagcaggggaagaagtggagtctggaggatgatgacgatgat
gatgaagagactcaagcgcccgcggagccggacgaggacgagcaggagaaagacgcagcg
gacgaggcggaggaggctgcgctcatggaggaggagaccggagaggagctcgaccctctg
gacgcctacatggaggaggtcaaagaagaggtcaagaagttcaacatgggcaccatgaaa
ggaggaaacgacaagcataaaggaggcatgtctgtgaccaaagtggtgacggtcgtgaaa
accaagaagatgctgcactcctccaagaagaaaggagagctgatggagaacgatcaggac
gccatggagtactcatcagaggaagaggtcgtggacctgcagacggctctcacaggcttt
cagaccaaacagaggaaagttctggagcctgtggatcatcagaagatcgaatatgaatcc
ttccgcaagaacttctacgtggaggtgccggagctggctcggatgacccctgaagaggtg
aatgaataccgtctggagctggagggaatcatcgtcaaagggaaagggtgtccgaagccc
atcaagacatgggtgcagtgtgggatatccatgaaggtgctgaacgcaatgaagaaacac
aactatgagaagccgaccccgatccaagcccaggccattccggccatcatgtcgggacgt
gatctcattggcatcgctaaaacaggaagcggaaagaccatcgccttcctgctgccgatg
ttccggcacatattagaccagcggccgctaggagagggagaaggacccatcgccgtgatc
atgacccccacgcgagagctggctctgcagatcaccaaagagtgcaagaagttctccaag
tctctgggcctgcgtgtggtgtgtgtgtacggaggcacgggcatcagcgagcagatcgcg
gagttgaagcgaggcgcagaaatcatagtgtgcactcctggacgaatgatcgacatgttg
ggcgccaacagcggtcgagtgaccaacctgcgcagagctacgtatgtggtgatggacgaa
gctgaccggatgttcgatatgggctttgaaccgcaggtgatgcgtatcgtggataacgtc
aggcccgaccggcagaccgtcatgttttctgccacatttccacggacaatggaggccttg
gcccgcaggatcctgtccaagcccatcgaggtgcaggtgggcggcaggagtgtggtgtgt
tcagacgtggagcagcacgtgattgtgatcgaggaggagaagaagttcctgaagctgctg
gagattctgggtcactatcaggagaagggatccgtcatcatcttcgtggacaagcaggag
cacgccgacagcctcctgaaggacctgatgaaggcctcgtacccctgcatgtcgctgcac
ggaggcattgaccagtacgacagggacagcatcatcaacgacttcaagaacggagcctgt
cggctgctggtggccacctccgtcgccgcacgaggcctggacgtcaagcacctcatcctg
gtggtcaactacaactgccctaaccactatgaggactacgtgcaccgcgccggacgcacg
ggacgagccggcaacaagggtttcgcgtacacgttcatcactgcagaccaggtgcgatac
tccggcgacatcatcaaagccctggagctgtccggatcgcccgttccccccgagctcgag
cagctgtggaccggcttcaaagagcaacagaaagctgagggcaagagcatcaggagcagc
agcggattttccgggaaaggcttcaagttcgacgagaccgaacatgcgctcgccaacgag
aggaagaagctgcagaaagctgcgttgggtctgcatgactctgacgatgatgacgcggct
ctggacatcgacgagcagatcgagagcatgttcaactctaagaagcgtgtgaaggatttc
tcggccccgggcggcgccgcgggaggaggttctggtggcgtgagcggagccgtgacagcc
gtctccggcctgagcaccccctccgctggaaacattcagaaactggagatcgccaagaaa
ctggcggccaggatacaggtgcagaagaatctgggcgctgaggcgcaggatgtgatgcag
caggcgacaaatgccattttgcgcggcgggacgatgatcgcgccctcggtctcggccaag
accatcgcggagcagcaggcggagaagatcaacgctaaactcaactacacgcctgtggag
aagctggaggaggaccgacaggccgcagaggccgccgaaaccgtcaagagatacgaggag
gagttagagatcaacgacttccctcagacggcccgatggaaggtgacgtcgaaggaggcc
cttcagcgcatcggcgagtattcagaggccgccatcaccatacgaggaacctacttcccc
ccgggcaaagagcccaaagagggcgagcgcaagatctacctggccatcgagagtgcgaac
gaactggccgtgcagaaggccaaagcagagatcacacgcctcatcaaagaggaactcatc
cgcctgcaaaactcgtaccagccgaccagcaaaggccgatacaaggttctgtag
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