Chanodichthys erythropterus (predatory carp): 137012903
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Entry
137012903 CDS
T10334
Name
(RefSeq) DNA repair protein RAD50-like isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
cery Chanodichthys erythropterus (predatory carp)
Pathway
cery03440
Homologous recombination
cery03450
Non-homologous end-joining
cery04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
cery00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
137012903
03450 Non-homologous end-joining
137012903
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
137012903
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cery03032
]
137012903
03400 DNA repair and recombination proteins [BR:
cery03400
]
137012903
DNA replication proteins [BR:
cery03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
137012903
DNA repair and recombination proteins [BR:
cery03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
137012903
BRCA1-C complex
137012903
NHEJ (non-homologous end-joining)
MRX complex
137012903
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
AAA_15
SbcC_Walker_B
SMC_N
ATG17_like
AAA_29
DUF6284
AAA_13
Intein_splicing
AAA_22
AAA_16
Motif
Other DBs
NCBI-GeneID:
137012903
NCBI-ProteinID:
XP_067232489
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All DBs
Position
22:5023686..5081200
Genome browser
AA seq
1312 aa
AA seq
DB search
MSKIEKMSILGVRSFGVEDKDKQVISFFSPLTVLVGPNGAGKTTIIECLKYITSGDFPPG
SKGNTFVHDPKDAHETDVRAQIRLQFRDVNGDAVAVQRSMQSTQKGKKTEFKTLEGVITR
IKHGEKVSLSSKCAEIDREMISSLGVSKAVINHVIFCHQEESNWPLSEGKALKQKFDDIF
SATRYIKVLETLRMLRQKQTSIVKNCQMELKYLKQNKDKAQEIREQLTTKEAQLSSSKEN
VQRIENQIDPLENRLYDIDSSLSKIMKLDNDIKALESRKKQMEDDNRELEEKMEQVFQGS
DDQLQDMYQNHQRTVKEKERRLTECQRELERAGRECQRMNRIKSDLLVEQGRLQLEADRH
TENIKKRDNQVKSLASSLELEGYDRTPLNERQLQSFHRQVKERLEQDSEDLNQTMHDMQE
KEAQKQQSIDDLRDKKTGLERTIELKRDIQAKKQQELKNIKSDLQRLEGSSSRLQELDTE
LQKMERELDNAVQACTVDSLKAEVIELQRDKTELDQAQRKLDKEMELLNTHTRAHAEMDM
LKKTKMDKEEQVRKIKSRHNEELVSLLGHFPSKRELEDWIHSKSREINSTRERLSKMNKD
LASGEQNKTHFTAEIKRKEELLASYEERLFNVCGSQDFQSDLSKLDDELEKCSKQRAMLA
GATAVYSQFISQLTEEGEPCCPVCQRVFPSEAELQDVINDMQSKLRLVPDKLKNTEQDLK
RKERRRDEMMALKPIRQSIVELQEKELPELRNKLQRVNRDIEKLKGDTEEQETLLCTLMS
EEDTAKACLQDVSLMDRFQLDLKDVERKIAQHAARLQGVDLSRTMQQVSQEKQETQLRLD
TTCSKIELKRKLIQDQQEQIQALRSSVNEIRGEKLQISSNMQKRQQLEEQCVEFSTEIQT
LHRDIRDAKEQISPLAATLEKLQLEKQDLAKRRMQKQAEGQEKINAIKEKVKNLTQLEKE
ITKYIEEGKDTYKEQKETELQEVDKQLHEAEKHREKTNKDMGNIRQDIDTQKVQERWLQD
NLTLRKRVEELKEVSRKREALLKEMGNMQVVQLRNERREVERKLEDLKKNRSVALGRQKG
YEDEILRFRKELSEDQYCRAEDLYRDKMIVMRTTELANKDLDIYYKALDQTIMKFHSMKM
EEINKIIRDLWRSTYRGQDIEYVEIRSDVDENASAGLKRRTYNYRVVMVKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSRQR
NFQLLVITHDEDFVELLGRSNYVEHFYRIRKNQDQCSEITKCSINTLNSYLH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagattgaaaagatgagtattctgggagtgaggagttttggagttgaggataaa
gacaaacaagtgatctcctttttcagccctctgacggtgcttgtgggacctaatggagct
ggaaaaacgaccatcatcgagtgtctcaaatacatcacttcaggagactttccaccagga
agtaaagggaacacctttgtccacgatcccaaagatgctcatgagacggatgtacgggcg
cagatcagactccagtttagagacgtgaatggcgatgctgtggccgtccagaggtctatg
caaagtacacagaagggcaagaaaactgagttcaaaacccttgagggtgtcattaccaga
atcaagcacggagagaaagtgagtctgagctctaaatgtgctgaaatagaccgtgagatg
atctcatccctgggtgtctccaaagctgttatcaaccatgtcatcttctgccatcaagag
gagtccaactggcctctcagtgaagggaaagctctcaagcagaagtttgatgatattttc
tcagccacaaggtacattaaggttttggagactctgcgaatgttgaggcagaagcagacc
agtattgttaaaaactgccagatggagctcaagtatctaaaacagaacaaagataaggcc
caagagattagagagcagctgaccactaaagaggctcagctgtcttcctccaaagagaat
gtccaacgcatcgagaatcagattgacccactggagaaccgactctatgacatagacagc
agcctcagcaaaataatgaagttggataatgacatcaaagctctggaaagcaggaagaaa
cagatggaggatgataaccgggaactagaggaaaagatggagcaggtgtttcagggctca
gatgatcagctgcaggacatgtatcagaaccaccagcggactgtcaaagagaaggaaaga
agacttacggagtgtcagcgcgagcttgaacgggccggccgagagtgccagaggatgaac
cgcatcaaatctgaccttctagttgagcaaggccgtctgcagttggaggcagataggcac
acagagaacattaaaaagagggacaaccaggtgaaaagtttagcgtcttccctggagttg
gagggctatgatcggacacctcttaacgaacgacagctccagagcttccacagacaagtc
aaagagagactggagcaggactctgaagacctcaaccaaactatgcatgatatgcaggag
aaagaggcacagaagcagcaaagcattgatgatctccgtgataagaagaccggtctagag
agaaccattgagctgaagagagacatacaggccaaaaaacaacaggaactaaagaacatc
aagtctgatctccaaagactggagggctcctctagcagactgcaggagctggacactgag
cttcagaaaatggagcgggagcttgataatgctgttcaggcctgtactgtggacagtctg
aaggcagaagtaattgaactacagagggataaaactgaactggatcaggcccagcgcaaa
ctggacaaggagatggaactgctcaacacacacaccagggcacatgcagagatggacatg
ctcaagaagaccaagatggataaagaggagcaagtgaggaagatcaagtccagacataat
gaagagctggtgtctctgctgggacacttcccaagcaagagagagctggaagactggatc
cactccaaatccagagagatcaactccaccagagaacggctcagcaaaatgaacaaggat
cttgcgtctggagaacagaataagactcacttcacggcagaaatcaaacgtaaggaagag
ctgctggccagttatgaagagagactttttaacgtgtgcggcagtcaggacttccagtcg
gacctgagcaaactggatgatgagctggagaagtgttctaagcagagagccatgctggcg
ggtgccacagccgtgtacagtcagttcatcagccagctgacagaggagggcgagccctgc
tgtcccgtatgtcagcgcgtgttcccgtcagaggcagagctccaggatgtcatcaatgac
atgcagtccaagctgcggctcgtcccagacaaactgaagaacactgagcaggacttgaag
agaaaagagcgcagacgtgatgaaatgatggctctgaaacccatcaggcagtccatagta
gagctccaggagaaagagctgccagagctcagaaataaactccagcgtgtgaatcgagac
attgagaagctgaaaggagacactgaggagcaggagacactgctgtgcacactgatgtct
gaggaagacacagccaaggcctgtctgcaggacgtctccctcatggatcgctttcagctt
gacctgaaggatgtagagagaaagatcgctcaacatgcagccaggctacagggagttgac
ctaagccgcaccatgcagcaggtcagccaggagaaacaagagacccaactccgcctggac
accacctgcagtaagatcgagctgaaaaggaaactgatccaggaccagcaggagcagatc
caggccttgaggagcagtgtaaacgagatccgtggagaaaagctccagatttctagcaac
atgcagaaacgtcagcagttggaggagcagtgtgtggagttctccactgaaatccaaacg
ctccaccgagacattcgagatgcaaaggagcagatttctcctctagctgcaactctggag
aagctccagctagagaaacaggaccttgccaagcgcaggatgcagaaacaggcagaaggg
caagaaaagataaatgcaatcaaggaaaaagtaaaaaacttgacccaacttgaaaaagag
atcaccaagtacattgaagagggcaaagacacctacaaagagcaaaaagaaactgagcta
caagaggtggacaaacaactacacgaggctgaaaaacatagagagaagaccaataaagac
atgggcaacatccgacaagatattgacactcagaaggttcaagagcgctggctacaggat
aacttgaccttacggaagcgtgtggaggagctgaaagaggtgtctagaaaacgtgaagcc
ttgcttaaggagatgggcaacatgcaagtcgtgcagctgcggaatgagcggcgagaagtg
gagcgaaaattggaggacctgaaaaagaaccgcagtgtggctctcggtcgacagaaaggc
tacgaggacgagatcctccgttttcgtaaagagctcagtgaggatcagtattgccgggcc
gaggatctctacagagacaaaatgattgtcatgagaacaacagagttggccaataaagac
ctggacatctactataaagctctagaccaaacaataatgaagtttcacagcatgaagatg
gaggagattaataaaatcatcagagatttatggcggagcacatacagaggacaagacatt
gagtacgtagagattcgctctgatgtggatgagaacgcctctgctggactgaaaaggagg
acttataactatagagtggtaatggtcaaaggagacacggctttggacatgcggggacgt
tgcagtgctggacaaaaggttctcgcctccctcataatacggttggctctggctgagacg
ttctgtctgaactgtgggattctggcgctggatgagcccaccaccaatttagacagagaa
aatatagagtccttggcacacgcactggtggagataatcaagagtcgttctcgtcaacgc
aacttccagctgcttgttatcacccacgacgaggattttgttgagctcctgggacgatcc
aactatgtggagcatttctacaggatcaggaagaatcaggaccagtgctcagagatcaca
aagtgcagtatcaacacactcaactcctacctacactga
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