Chanodichthys erythropterus (predatory carp): 137012977
Help
Entry
137012977 CDS
T10334
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cery Chanodichthys erythropterus (predatory carp)
Pathway
cery03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cery00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137012977 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cery03019
]
137012977 (xab2)
03041 Spliceosome [BR:
cery03041
]
137012977 (xab2)
Messenger RNA biogenesis [BR:
cery03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
137012977 (xab2)
Spliceosome [BR:
cery03041
]
Complex B
Other components
Prp19-related factors
137012977 (xab2)
Complex C
137012977 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
Suf
TPR_19
TPR_12
TPR_8
TPR_15
ARM_TT21_C
TPR_16
ARM_TT21
NRDE-2
TPR_1
Tcf25
LTN1_E3_ligase_6th
DUF4515
Motif
Other DBs
NCBI-GeneID:
137012977
NCBI-ProteinID:
XP_067232623
LinkDB
All DBs
Position
3:complement(47887862..47899497)
Genome browser
AA seq
849 aa
AA seq
DB search
MPSLSGKADVLFEDDDLPYEEEIIRNPYSVKCWMRYIEHKQNAQKSVLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCITDPAYEEVNNCHERALVFMHKMPRIWIDYCQFMVSQCK
ITRSRRTFDRALRALPVTQHPRIWPLYLRFGRNLPLPETAIRVFRRYLKLSPENAEEYID
YLRSVGRLDEAALRLAAVVNDENFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSELGQDEDEDIDLELRLARFELLITRRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGQPRQIINTYTEAVQTVDPVKATGKPHSLWVSFARFYEDNEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYDQALRILRKATAIPSRKAEYFDASEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEDSFKAYERGI
ALFKWPNVHDIWNTYLTKFIDRYGGKKLERARDLFEQALDRCPPKYAKTIYLLYAKLEEE
YGLARHAMAVYERATAAVEPEERHQMFNIYIKRAAEIYGVTHTRAIYQKAIEVLPDEHAR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRLTAHFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTNATGTISDLAPGQSGVDDMRLLEQKAQQLAAEAEQ
DRPKPKDKILFVRSDTSRSELAELAKQANPDEIDIDDDEDEDAEDGEPDEVQLEQKSVPT
AVFGGLKDD
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgccatcgcttagcgggaaggcagacgttttattcgaagatgatgatttgccttatgag
gaagaaatcatcaggaatccatattcagtgaagtgctggatgcgttacattgagcacaag
caaaatgctcagaaatcggtgctcaatatgatctatgaaagggctttaaaagagctgcct
ggcagttacaagttgtggtacaactacctgagagagaggaggaaacaggtgaaaggcaag
tgtatcacagatccagcatatgaggaggtgaacaactgtcatgagagagcacttgtgttt
atgcataagatgccgaggatatggatcgactactgtcagttcatggtgtctcaatgcaaa
attacacggagccgacggacgttcgatagggcgttacgagctctgcccgttacccagcat
cctcgcatctggcccttgtatcttcgctttggccgcaacttgcctctcccagaaacagct
attcgtgtttttcgtcgttatctaaagttgtctcctgagaatgcagaggaatacattgat
tacctgcgttcagttggacgtctggatgaagctgcactcagactggcagctgtggtcaat
gatgaaaactttgtttctaaagagggaaagtctaattatcagctttggcacgagctctgt
gacctcatctcacaaaacccggacaaggtgacctcactgaacgtgggagcgattatccga
ggaggtctcacccgctttactgaccagcttggcaaactctggtgttctctggctgattac
tacatccgcagtggccactttgagaaggctcgagatgtgtatgaggaagccatcctaacc
gtagtcactgtgcgagacttcacccaggtttttgacagctatgcacagtttgaagagagt
atgatcgctgccaagatggagaccacatctgaactgggacaagacgaagatgaagacatt
gacttggagttgcgattggcccgttttgagttgctgataacacgacggccgctcttatta
aacagtgtgctgctccgtcagaaccctcacaacgttcacgagtggcacaagagagtcaaa
ctctacgagggccaacctcgacagatcatcaacacatacacagaggcggtgcaaacagta
gatcctgtgaaagccacaggaaagcctcacagtctctgggtgtccttcgccagattctat
gaggataacgaacagctagatgatgctcggactatctttgagaaggccacgaaggtgaac
tacaaacaggtggatgatcttgctgcagtgtggtgtgagtatggagagatggagctgaga
catgagaactatgaccaggctttgcgtatactaaggaaagcaacagcgattccatcaaga
aaagcggagtactttgatgcatcagaaccggtgcagaatcgagtatataaatctttgaaa
gtttggtccatgcttgccgacttggaggagagtcttggcacgttccagtccacaaaggca
gtgtacgatcgcatcattgatctccggatcgccacgcctcagatcatcattaactatgcc
atgtttcttgaagaacacaactactttgaagatagcttcaaggcatatgagcgtggcatt
gccctctttaagtggcctaatgtccatgacatctggaacacgtacctcactaagttcatc
gaccgttatggaggcaagaagctggagagagcacgagatttgtttgagcaagcgctggat
aggtgtcctcctaaatatgccaaaacaatctacctgctgtacgctaagctggaagaggag
tacggtctggcgcgacatgccatggctgtgtatgagagagccaccgcggctgtagagcca
gaggagcgccatcaaatgttcaacatctacatcaaacgggcagcagagatttatggtgtc
actcacacaagagccatctatcagaaagccattgaggtcctgccagatgaacacgccaga
gacatgtgcctgcgcttcgctgacatggagagcaaacttggagagattgacagagcgaga
gccatctactcttactgctctcagatctgtgatcccaggttgactgctcatttctggcaa
acctggaaggagtttgagattcgacacggtaacgaggacactatccgtgagatgctgagg
attaaacgtagcgtgcaggccacatacaacacccaagtcaacttcatgtcctctcagatg
ctcaaggcaaccactaatgctactggaacaatatcagatcttgctccggggcagagcgga
gtggatgacatgaggctgctggagcagaaggctcagcaactggcggcagaggctgaacag
gacagacccaaacctaaagacaagatccttttcgtcagaagtgacacctctcgcagtgaa
ctcgccgaactggccaagcaagctaatccagatgagattgacatagatgatgatgaagat
gaggatgcagaggatggagaaccagatgaagtccagttggagcagaaatctgtccctact
gctgtcttcggaggactaaaggacgactga
DBGET
integrated database retrieval system
