Chanodichthys erythropterus (predatory carp): 137013065
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Entry
137013065 CDS
T10334
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cery Chanodichthys erythropterus (predatory carp)
Pathway
cery03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cery00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
137013065 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cery03021
]
137013065 (pcf11)
03019 Messenger RNA biogenesis [BR:
cery03019
]
137013065 (pcf11)
Transcription machinery [BR:
cery03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
137013065 (pcf11)
Messenger RNA biogenesis [BR:
cery03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
137013065 (pcf11)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
DUF6980
Motif
Other DBs
NCBI-GeneID:
137013065
NCBI-ProteinID:
XP_067232752
LinkDB
All DBs
Position
22
Genome browser
AA seq
1462 aa
AA seq
DB search
MSDEGAREDACREYQSSLEDLTFNSKPHINMLTILAEENIQFTKDIVAIIEAQIAKAPPG
EKLPVLYLVDSIVKNVGGDYLEVFAKNLVNSFICVFEKVDEATRKSLFKLRSTWDEIFPL
KKLYALDVRVNSIDPAWPIKPLPPNVNASIHVNPKFLKPTEETSPKPPAPQPPAPSLTQE
QMIRQQLLAKQKQLLELQQKKIELELEQTKAQLAASPAIASNHHASAPARFDISPKVSQT
APAPQTKPWLPAPSEKLSTRDPRLNRAVNAKEHVMHKKDSQVTPSFLNTSEKRGQVSAER
PSKLEKLRIPKKDNSNVEEKPKSKSMSPSGKGILFRPRGMESEHPKAAEVNKKDPRLHKQ
MHERTDSKDEDVREKKRSSEKKDRDEAVKNLDHQKSSSTRGKLINGSLNKHERLETFLKQ
EIKVNKANVRKRSRSRSRSPPLHSPKRKERRSPPKRKTRSITPPPKSGKARLSKHPHNDD
AFPQLSVRDERSTKKSAPESRRSKRPLEDRTADQKDGPQQRISPAEHKDTKDGKRWRSGW
EENKHPKQSDPDLSHGRLGTQRHKTWNTNQRPSTPRTPKQHRLSVDSNIQIPEALNSASK
RDLLRKASKRHAEGEISNDEFLNVAHQINQLFQYQEERQRSDSWDESCDEGVYPSKKKPQ
GLGTMSDAALSYLEHKSKLKRTQLLRPVQKGGHSPLHDMLLYQPHHELTERYSESSDVNK
MSCDAIKPVSDHEDPRRTDRPPCTGSTFRNSPSPVSLDGTCGKSTVLPFERASSPVEMDQ
QPDGDISPRFESPNSVHSGTGPDDGPISVECVPRHDHFLEQGRSGRNHDESPGNTPTHSS
EGPVPQVNAPRHDGPNIPQRFDIYKGSQASFDGPPSHMREPRLDGPQMPYAAAPPRYEGS
TGAYDGSGGPVRYPGLRFDAPHRFPKPHERPVRFNNPPVSHRPMRCIEPHNMVRFDAQAP
IHYDHPMHQNRFVNPPRFDNPHMPHGPPGYEEPRFPARLMNFDEQQGAVRFDSPSGGMRF
ENPVQPEPLRFDAPPVMPRYDPQGPPRFCGPNIPNQLRPQELTMFDQTQTQAQAPVINPA
VPPPNFNMPPMNTFGGPAQQFPMQQNVSQASNFSVPVPTSSDFQGSFRPAPFPGPGVGSV
PQPMMGGQPFMPPNQISFQPGSQFPQPEPFRQIDVNDLFSKLVNTGIIKPAQTDSTTDST
SASQTLTVPEEEEEEEQEEDDDVPDLTGFVLDDMKQRHDSIITKLYTGIQCYSCGMRFTA
SQTDVYADHLDWHYRQNRSEKDISKKVTHRRWYYTLTDWIEFEEIADLEERAKSQFFEKV
HEEVVQKTQEAAKEREFQSVKAAADVVHELCEICQEQFEMYWEEEEEEWHLKNAIRVDGK
TYHPSCYEDYKNTSSFVDCTPSPNKMLTENPLTAFMKQEQGDEEPCSSIKEEPSEDNTDT
PMVKEEVQVKLEEESQTSAIIF
NT seq
4389 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgaaggcgcgagggaggacgcctgccgcgagtatcagtcctcgctggaagat
ctgactttcaacagtaaaccgcacatcaacatgctcaccattctagccgaagaaaacatc
cagttcaccaaggatatcgtcgcaataattgaagcacaaattgccaaggcacctcctggt
gagaagctcccagttttgtacttagtggattccatagtgaagaatgttggaggggattac
cttgaagtgtttgctaagaacctagtcaattcctttatttgtgtatttgagaaggtggat
gaggccactagaaaaagtctcttcaaattgcgttccacatgggatgaaattttccccttg
aagaagctatatgcactagatgtgcgtgtgaactctatagatcctgcctggcctataaaa
ccattgccaccaaatgtgaatgccagcattcatgtcaaccccaaatttttaaaaccgact
gaggaaacatctccgaagcctccagcaccgcaacctccagctccgagcttgacacaagag
caaatgataagacaacagttgcttgcaaagcaaaagcagttattagaacttcagcaaaag
aagatagagcttgaacttgaacaaacaaaagctcagttggccgccagccctgctattgct
tcaaaccaccatgccagtgctccagcccgttttgatatctcaccaaaagtcagtcaaacg
gctcctgcaccacagaccaaaccttggcttccagcaccatcagaaaaattgtcaaccaga
gatcctagattaaacagagctgtaaatgcaaaggaacatgtgatgcataagaaagatagt
caggttacaccaagctttctgaatacatcagaaaaaagaggacaagtctcagctgaaaga
ccgagtaagttggagaagttgaggattccaaaaaaggataactctaacgttgaggaaaaa
cctaaatccaagtccatgtcaccgtctggaaaaggtatcctttttagacccagaggaatg
gagtctgaacatccaaaggctgctgaagtgaataagaaggacccacggctacataagcag
atgcatgaaaggacagattcaaaagatgaggatgtcagagagaagaaaagaagttcagag
aagaaagatagggatgaagctgtcaaaaacttggatcatcagaagtccagcagcaccagg
ggcaagcttataaatggctctctaaacaagcatgaaaggcttgagacatttctgaaacaa
gaaattaaagtgaacaaagcaaatgttagaaaaaggtctcggtcaagatcacgttcgcca
ccgttacattctcccaaaagaaaagaaaggcgatcacctccaaagagaaaaaccaggagt
attactccaccccccaagtctggaaaggctaggctaagtaaacatccacataatgatgat
gcttttccacagttgagtgtaagagatgaacgaagtactaagaaaagtgccccagaatca
agacgatcaaaaaggccgcttgaggatagaactgctgatcagaaagatggaccacagcag
agaatttctcctgcagagcataaagacacaaaagatggcaagaggtggaggagtggatgg
gaagaaaataaacatcccaaacagtcagatccagatctttcacatggacgactgggcacc
cagagacacaagacttggaacactaatcaaagaccatccacacctcgtacacctaagcaa
catcgcttgagtgttgatagcaacatacaaataccagaagcactcaattctgcaagtaaa
cgggatcttttaagaaaggctagcaagaggcatgctgagggtgaaatatccaatgacgaa
ttcctcaatgtagcccatcaaattaaccaactctttcagtatcaagaggaaagacagcgg
tctgactcttgggatgaatcatgtgatgagggagtgtatccatcaaaaaagaaaccacaa
ggactgggaaccatgtctgatgctgcgctttcttatcttgagcataaatccaagttgaaa
agaacacaactcctccgcccagtgcaaaaaggggggcattcgcctttgcatgatatgttg
ctctatcaacctcatcatgaactgactgaacgatacagtgagagctcagatgtgaataaa
atgtcttgtgatgccataaagccagtctctgaccatgaagatcctagaagaactgacaga
cctccatgtacaggttccactttcagaaattcaccaagcccagtcagcttggatggaacc
tgtggaaaatccacagtactgccttttgaacgggcatcatctccagttgaaatggatcaa
cagcctgatggagacatcagcccacgttttgaaagtcccaacagcgtgcactcgggtaca
ggcccagatgatggtccaataagtgtagagtgtgttccaaggcatgatcatttcttggaa
cagggaagaagtggacgaaaccatgatgaatctcctggtaatacaccaactcactcctca
gaaggacctgtgccacaggtgaatgcaccacggcatgatggaccgaatattcctcaacga
tttgatatatataagggttctcaagcttcctttgatgggccacctagccacatgagagag
ccaagattagacggtcctcaaatgccttatgctgctgctcctcctcggtatgaaggcagt
acaggtgcatatgatgggtctggtggacccgtaaggtatcccggacttcgctttgatgcc
cctcaccgatttcccaaaccccatgaaagacctgtgagatttaacaacccaccagtttca
catagaccaatgagatgcatagagcctcataacatggtgagatttgacgctcaagcccca
attcattacgatcacccgatgcaccaaaacagatttgttaatccaccaaggttcgacaat
cctcacatgccacatggtccaccaggatatgaggaaccacggttcccagctagactaatg
aattttgatgaacagcagggtgcagttagatttgatagtccgtcaggtgggatgcgcttt
gagaatccagtgcagcctgaacccttaagatttgatgcaccgcctgtcatgccaagatat
gaccctcaaggtcctccaagattctgcggtccaaatattccaaaccagctgagacctcaa
gagctgacaatgttcgatcaaactcaaactcaagctcaagctcctgtgataaaccctgct
gtaccaccacccaatttcaacatgccacccatgaacacgtttggtggcccagcccaacag
tttcccatgcagcaaaatgtttcgcaagcatccaacttcagtgtgccagtccctacatca
tcagatttccaaggttcatttagacctgctccattccctggtccaggtgttgggagtgtt
cctcagcctatgatgggaggtcaacccttcatgccaccaaaccaaatttctttccagcct
ggttcccagtttccacagcctgagccatttaggcaaatagatgtgaacgatctgttttca
aaacttgtaaacactggaataataaaacctgcacaaacagactcaacaactgactccaca
tcagcaagccagactttaactgtgcctgaagaagaagaggaggaggaacaagaggaagat
gatgatgtcccagatttgactggctttgttttggatgacatgaaacagagacatgacagc
attatcaccaaactatatactggaatccagtgctattcctgcggcatgcgttttacggcg
tctcagacagatgtgtatgcggatcatttggactggcactacagacagaatcgttccgag
aaggacatcagtaagaaagttacacatcgccggtggtactacactctgacggattggatc
gaatttgaggaaatcgctgatctcgaggagagggcaaagagtcagttctttgaaaaagtt
catgaagaggttgtacagaaaacccaggaggcagccaaagagagagagttccagagtgta
aaagctgccgcggatgtcgttcatgagctatgtgagatttgccaggagcagtttgagatg
tactgggaggaggaagaggaagagtggcacctgaaaaatgccatccgagttgatggaaag
acatatcatccctcatgttacgaagactacaaaaatacatcctcttttgtggactgcaca
ccctcacccaataaaatgcttacagaaaaccctttaacagctttcatgaaacaagagcag
ggtgatgaggagccatgctccagtattaaagaagagccctccgaggacaatacggataca
ccaatggtaaaagaagaggttcaggttaagttagaagaagaatcacaaaccagtgcaatt
attttctaa
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integrated database retrieval system
