Chanodichthys erythropterus (predatory carp): 137013639
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Entry
137013639 CDS
T10334
Symbol
col11a1a
Name
(RefSeq) collagen, type XI, alpha 1a isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
cery Chanodichthys erythropterus (predatory carp)
Pathway
cery04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cery00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
137013639 (col11a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cery00536
]
137013639 (col11a1a)
Glycosaminoglycan binding proteins [BR:
cery00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
137013639 (col11a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
137013639
NCBI-ProteinID:
XP_067233690
LinkDB
All DBs
Position
23:complement(12820128..12908388)
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AA seq
1811 aa
AA seq
DB search
MERPRWSPMWKTKRWLLDSTVFKFITVSLVLVLQAPHVRAAEHVDVLKVLEFPTVPEGVQ
KTSGFCTNRRASQPDTAYKIGKNAQISAPTKQLFPDGVFPEDFSILTTIKPKAGIQSFLL
SIYNEKGVQQLGVELGRSPLFLYEDQTGKPAPEDYPLFRSLNLADGKWHRVGISVEKKTV
TIVVDCKKKLTKPLGRSDHASIDTNGITVFGTRILDEEAFEGDIQQLLIVADPKAAYDYC
EHYSPDCDVPHKDTLQAQEPEEEYTTAVEYGDLYDYYEGATPTATEEYSEPQLNNVDGEY
YDYGTVDASKTRSPVATTGPNQAVEEEVFGDYVTETAQAGLDPTAAPEAVLPSGTADPVG
VDAYDFKEYDLKEYDVTGLDKNQYEYGAYDEFGNAAPNPTSTYEDSFGPGVAAETDIAET
EVGGGAVLGQKGEKGEPAVIEPGMLIEGPAGPPGPAGLPGPPGLQGPPGSAGDPGDRGPP
GRAGLPGADGLPGPPGTMLMLPFRFGGDGEKGPVVSAQEAQAQAILSQARLAMRGPPGPM
GLTGRSGPVGLPGPPGLKGESGDPGPQGPRGIQGPPGQIGKPGKRGRAGADGARGMPGES
GSKGDRGFDGLPGLPGEKGHRGENGPPGPPGPTGEDGPRGEDGEIGPRGLAGESGPRGLL
GPRGPPGPPGQPGIAGVDGPQGPKGNMGPQGEPGPPGQQGIPGTQGLPGPQGPIGPPGEK
GPQGRSGLPGLPGADGPPGHPGKEGPPGEKGALGQPGPQGPIGYPGPRGVKGADGVRGLK
GGKGEKGEDGFPGFKGDMGLKGDRGELGLAGPRGEDGPEGPKGRAGPNGEPGPLGPAGEK
GKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGGRGVAGKPGPRGQRGPTGPRGARGAR
GPTGKPGPKGTAGNDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGET
GFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAGGKEGAKGDPGPQ
GSPGKDGPPGLRGFPGERGLPGVTGPPGLKGAEGPQGPPGPVGSPGERGAAGPAGPIGLS
GRTGPQGPPGPAGEKGAPGERGPPGPAGRDGVQGPVGLPGPAGPQGPPGEDGDKGEVGEP
GQKGSKGDKGEQGPPGPPGLQGTIGAPGPAGGDGEPGPRGQQGMFGQKGDEGSRGFPGPP
GPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPPGADGPQGPPGGIGGMGSVGEK
GEQGEAGNPGPPGEPGPGGPKGERGEKGEAGPPGAAGPPGPKGPPGDDGPKGNPGPVGFP
GDPGPPGEPGVAGIDGGPGEKGEDGESGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQ
GEKGAKGEAGSEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAPGQDGPPGPM
GPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSAGSKGDSGISGAA
GPIGPPGPPGLPGPQGPKGSKGSTGPAGQKGDTGSAGPPGPPGPPGEIIQPLPMHMPKKS
RRSIDMQADEAGTMLDYGEGMEDIFSSLNNLKQDIERMKYPMGTQNNPARSCKDLQLAHP
EFPDGEYYIDPNQGCSGDSFKVYCNFTAGGETCIFPDKKSNGVRISSWPKEVPGSWFSEF
KRGKILSYVDAEGNPINMVQMTFLKLLTASARQNLTYNCHQSVAWHDATTDNYDRALRFL
GSNDEEMSFDNNPFITALSDGCAVRKGYGKTVLEINTPKIDQVPIIDVMFTDFGDPNQKF
GFEVGPVCFLG
NT seq
5436 nt
NT seq
+upstream
nt +downstream
nt
atggagaggccaaggtggtccccaatgtggaaaacgaaaaggtggcttttggattccact
gttttcaaattcatcacagtttccctcgtcctggttctgcaggctccacatgtcagagca
gcagaacatgtggatgtccttaaagtattagaatttcccactgtcccagaaggagtacag
aaaacttcaggattttgcacaaaccgaagagcatcacagccagacacggcctacaaaata
ggcaagaatgcccagatcagtgccccaaccaagcagcttttcccagatggagtgttccct
gaagacttttccatcctaaccaccatcaagcccaaagctgggatccagtccttccttttg
tccatctacaacgagaaaggcgtccagcaactaggcgtcgagttgggccgctcacctctc
ttcctgtacgaagatcagacaggcaagcctgccccagaggattaccctctgttccgctct
ctcaacctggccgacggaaagtggcatcgcgtaggcatcagtgttgagaagaagactgtg
accatcgttgtcgactgcaagaagaagctgaccaagcccttgggcaggagtgaccatgcc
agtattgacaccaatggtataactgtttttggcaccaggatcctggatgaggaagctttt
gagggtgatatccaacaactgctgattgtggccgaccctaaagcggcttacgactactgt
gaacactacagcccagactgtgacgtcccccacaaggacacactgcaagcacaggagccc
gaggaggagtacacaactgctgttgaatatggtgatttatatgattattatgagggagcg
acccccacagcgacagaggaatattctgagccgcagcttaacaatgtagatggggagtac
tatgactacggaacagtagatgcttccaaaactcggtctcctgtcgcaaccactggacca
aaccaggctgtggaagaggaagttttcggtgactatgtcactgagacggcccaggctggt
ctggatccgaccgctgccccggaggccgtgctgcccagcggcaccgccgaccccgtcgga
gtggatgcatatgactttaaggagtatgatcttaaggaatatgatgtgactgggcttgac
aaaaatcagtatgagtacggggcgtacgatgagtttggcaatgcggctccgaaccctacg
tccacttatgaggacagttttgggccaggggtcgccgccgaaaccgacattgctgaaaca
gaagtgggtggaggtgctgttctggggcagaaaggagagaaaggagagcctgcggtgatt
gagccaggaatgctgattgagggacctgctggaccacctgggcctgctggtcttccaggc
cctccaggtttacaaggccctcctggttcggccggagatcctggtgacaggggtcctccc
ggccgcgctggtcttcccggagcggatggcttgccaggaccccctggtactatgctgatg
ttgccattccgttttggcggtgatggggaaaagggtccagtggtgtcggctcaagaggcc
caggctcaggctattctctctcaggccaggctcgccatgagaggtccaccaggtccaatg
ggtctcaccggaagatctggcccagtgggtcttccaggtcctcctggactgaagggagag
agtggagaccctggccctcagggtccaaggggtatacaaggcccaccagggcaaatagga
aaacctggcaagagagggcgtgctggagctgacggggcccgtggaatgcctggagaatct
ggatctaagggtgacagaggttttgatgggcttccaggtctgcctggtgaaaagggacac
aggggagagaatggtcctcctggtccccctggacctactggagaggacggaccaagagga
gaagatggagagattggaccaagaggacttgctggtgagagcgggccgcgaggtctgctc
ggccctagaggccctcctggacctcctggacaacccggcattgctggtgttgatggtcca
cagggtcccaaaggaaacatgggaccccagggagagcccggcccgcctggacagcaggga
atcccaggaacacagggtctcccaggtccgcagggcccaattggaccacctggagaaaaa
ggtcctcagggaaggtctggtttgcctggattgcctggcgcagatggacctcctggacat
cctggtaaagagggcccacctggagagaaaggagctttgggccagcctggtccccagggc
cccatcggctatcctggccctcgtggtgtgaagggtgctgatggagttcgtggtctgaag
ggaggcaaaggagagaagggtgaggacggtttcccgggtttcaagggagacatgggtctc
aaaggcgacaggggtgaacttggattggctggacccagaggtgaggatggaccggagggc
ccgaaaggtcgtgcaggccccaacggtgaacctggacccctgggaccagctggagaaaag
ggcaaacttggtgttccaggattgcctggctatccaggacgtcaagggccaaagggttcg
actggtttccccggattcccaggagccaatggagagaaaggaggcaggggggtggcaggg
aaacccggtccaagagggcagagaggtccgacgggtccccgtggcgcacgcggtgccaga
ggcccaacaggaaaaccaggccctaagggcacagcgggcaacgacggtccacctggccca
cccggagagagaggacctcaagggccccagggtcccgttggtttcccaggaccaaagggc
ccccctggaccacctggaaaggatgggctgcctggtcaccctggtcagcgcggagaaact
ggtttccaaggcaaaactggcccgccaggacctggaggcgttgttggaccacagggtcca
acaggagaaaccggccctattggtgagagaggacatcctggaccccctggtccccccgga
gagcaaggtctcccaggtgctggtggaaaagaaggtgcaaagggagatccaggtcctcag
ggcagtccaggaaaagacggtcctccaggactgagagggttccccggagaaagaggtctt
cccggagtgacgggtccacctggtttgaaaggagctgagggccctcagggcccccctggc
cctgttggttcccctggtgagagaggagcagcaggacctgctggccccattggcttgtct
ggacgtactggtcctcagggacccccaggacctgctggagagaagggtgcaccgggagag
agaggtcctccgggtccagctggtcgggatggagttcaaggtccagtcggtctgccgggt
ccagcaggacctcagggtccacctggagaagatggtgacaagggagaagtgggcgaacca
ggacagaagggaagtaaaggcgacaaaggtgaacagggtcccccaggtccacctggtctt
cagggaactattggagctcctggacctgctggaggtgatggtgaaccaggtcctcgtgga
cagcagggtatgtttggacagaagggagatgaaggatcccggggcttccctggacctcct
ggtcccattggtctgcaaggtcttcctggaccacctggtgagaaaggagaaaatggagat
gttggtcccatgggtccccctggcccacctggtcccagaggtcctcagggtcctcctggt
gctgatggtccacaaggtccccctggtggaataggaggaatgggatcagtgggtgagaag
ggtgaacaaggagaagctggcaaccctggacctcctggcgagcctggacctgggggccca
aaaggtgagagaggagagaaaggtgaagctggtccccctggtgctgctggacctccgggt
cccaaaggaccccctggagatgatggacccaagggtaaccctggccctgttggatttcct
ggagaccctggtccacctggtgagccaggtgttgctggaatagatggaggcccaggagaa
aaaggagaggatggagagtctggtcaacctggacctcctggtccttctggagaagctggc
ccaccaggacctcctggcaaaagaggacccccgggggctgctggagctgaaggcagacaa
ggagagaagggcgccaagggtgaggcagggtccgagggtccaccaggtaaaactggacca
gttggccctcagggtcccgctggaaagcctggtcctgaaggtctacgaggaatccctggt
cctgtgggtgaacaaggacttcctggtgctcctggacaagacggccctcctggaccaatg
ggacctcctggtctccctggcctgaaaggagaccctggatctaagggtgagaagggtcac
cccggtcttatcggcctcatcggaccccccggtgagcagggagagaagggagatcgtggt
ttgcctggtcctcagggctctgctggcagcaagggagattctggtatcagtggtgctgct
ggtccgattggtccacctggtcctcctggattgcctggtccacaagggccaaagggatcc
aagggttcgactggtcccgccggtcaaaagggagacactggctcggccggacctcctggt
cctcctggtcctcctggtgagatcatccagcctctgcctatgcacatgcccaagaagtcc
cgtcgctccatcgacatgcaagcggacgaggcgggcaccatgctggactacggagagggc
atggaggacatcttcagctctttgaataatctcaaacaggacatcgagcgaatgaagtac
cccatgggcacgcaaaacaaccccgcacgcagctgtaaagaccttcagctcgctcaccca
gaattcccagatggtgaatactacatcgatcccaaccagggatgctccggggactccttc
aaagtgtactgcaacttcacagcgggaggcgagacctgcatcttccctgataaaaagtca
aatggagtgagaatatcctcatggcccaaagaagttcccggctcctggttcagtgaattt
aagcgtggcaaaatactttcgtacgtggacgcagaaggcaacccgataaacatggtccag
atgacgttcctcaaactactgacagcctccgccaggcaaaacctgacctacaactgccac
caatcggtcgcctggcacgacgccactacggacaactatgacagggcactacgcttcctt
ggctccaatgacgaggagatgtcatttgacaacaaccccttcatcacggccctgtcagac
ggctgtgcggtgaggaagggctacggaaagacggttctggagattaacactcccaaaatc
gatcaggttccgatcatcgatgtgatgttcactgactttggggatcccaaccagaaattt
ggattcgaagttggtcctgtctgcttccttggctaa
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integrated database retrieval system
