Chanodichthys erythropterus (predatory carp): 137017364
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Entry
137017364 CDS
T10334
Symbol
ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cery Chanodichthys erythropterus (predatory carp)
Pathway
cery03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cery00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137017364 (ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cery03041
]
137017364 (ddx5)
03009 Ribosome biogenesis [BR:
cery03009
]
137017364 (ddx5)
Enzymes [BR:
cery01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
137017364 (ddx5)
Spliceosome [BR:
cery03041
]
Complex A
U1 snRNP components
U1 related factors
137017364 (ddx5)
Complex B
137017364 (ddx5)
Ribosome biogenesis [BR:
cery03009
]
Eukaryotic type
Pre-60S particles
Helicases
137017364 (ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
137017364
NCBI-ProteinID:
XP_067237635
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All DBs
Position
3:26429241..26434185
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AA seq
613 aa
AA seq
DB search
MPGYSDRDRGRDRGYSSGPPRFGGSRNGPPPGKKFGNPGDRLRKKHWNLDELPKFEKNFY
QEHHEVSRRSPQDVEHYRRTKEITVKGRDCPKPIMKFHEASFPNYVMDVITKQNWTEPTP
IQAQGWPVALSGKDLVGIAQTGSGKTLSYLLPAIVHINHQPFLEHGDGPICLVLAPTREL
AQQVQQVAAEYGKASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEVGKTNL
RRCTYLVLDEADRMLDMGFEPQIRKILDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVQ
INVGALQLSANHNILQIVDVCNDGEKEDKLIRLLEEIMSEKENKTIIFVETKRRCDDLTR
RMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVINYDYP
NNSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQAHDLVSVLREANQAINPKLIQMAEDRG
GRSRGGRGGGYRDDRRDRHSSSRRDFNSYSQDNRNGDSYGQKKVFGNKTQNGSSGYNNSS
SSSSFNGGYSNNGQGNFGNQSGGYGNQGYQNQQFGPSQGGVQNSMNHPPPFPFNPQQMPQ
SMQFPMAPPAFPQ
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatattccgacagagaccgcggtcgtgacagaggctacagcagtggcccccca
cgctttggaggcagcagaaatggaccacctccgggcaagaagtttgggaatccaggtgac
cgtctgcggaaaaagcactggaacctggatgagctccccaagtttgagaagaacttctat
caggagcaccacgaggtttctcggaggtcacctcaagatgttgaacactacaggaggact
aaagagatcacagtgaagggtcgagactgtcccaaacccatcatgaagttccatgaagca
agctttccgaactatgtaatggatgtgatcactaaacagaactggactgaaccaacaccc
attcaagctcaggggtggccagttgcacttagtggcaaagatttggtcggcattgcacag
actggctcgggaaaaaccctctcgtacttgcttcctgctattgttcacataaaccaccaa
ccattcctggagcatggagatggccccatttgcttggtgttggctcccacccgtgagttg
gcacagcaagtccagcaggtggcagcagagtacggcaaagcttctcgtctcaagtccacc
tgcatctatggaggcgctccaaaaggaccacagatccgggacctggaaaggggggttgag
atctgcattgccacacccggaagacttattgatttcctagaagtcggaaaaacaaatctg
cgcagatgcacgtatcttgtgctggacgaagctgaccggatgcttgacatgggttttgaa
cctcagattcggaaaattttggaccaaattagaccggaccgacagactctaatgtggagt
gctacgtggcccaaagaggtgaggcagctagccgaggacttcctgaaggagtatgtacag
atcaacgttggtgctctgcagctcagcgccaaccacaacatcctacagattgttgatgtt
tgcaatgatggcgagaaagaggacaaactgatacgtctgctggaggaaatcatgagtgag
aaggagaacaagaccattatctttgtggagaccaaaaggaggtgtgatgaccttactagg
aggatgcgtagggatgggtggccagcaatgggtatccatggagacaaaagccagcaggaa
agggattgggtgctcaatgaattcaaatatggaaaagcgcccatcctcatcgccacagat
gtcgcctccagaggactagatgtggaggacgtcaaatttgtcattaactatgactacccc
aacaattccgaggactacattcaccgcattggccgtacggctcgcagtcagaaaactggc
acggcgtacactttctttacgcccaacaacatgaaacaggctcacgacctcgtctctgtc
ctccgcgaggccaaccaagccataaaccccaagctcatccaaatggccgaagacagagga
ggtcgttcaaggggagggcgaggtggggggtatagggacgatcgccgggatcgccactcc
agcagcaggcgggacttcaacagctacagccaggacaaccgtaatggtgactcttatggg
caaaagaaggtgtttggaaacaagactcaaaatggatctagcggctacaacaacagcagc
agcagtagtagctttaatgggggttacagcaataacggacagggtaactttggcaatcag
tctggtggctatggaaaccaaggctatcagaaccagcagtttggtcccagtcaagggggc
gttcagaacagcatgaaccaccctccaccgttccccttcaacccccaacagatgccacag
tccatgcagttccccatggcccctcctgcattccctcagtaa
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