Chanodichthys erythropterus (predatory carp): 137017406
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Entry
137017406 CDS
T10334
Symbol
casc3
Name
(RefSeq) protein CASC3 isoform X1
KO
K14323
protein CASC3
Organism
cery Chanodichthys erythropterus (predatory carp)
Pathway
cery03013
Nucleocytoplasmic transport
cery03015
mRNA surveillance pathway
cery03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cery00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137017406 (casc3)
09122 Translation
03013 Nucleocytoplasmic transport
137017406 (casc3)
03015 mRNA surveillance pathway
137017406 (casc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cery03019
]
137017406 (casc3)
Messenger RNA biogenesis [BR:
cery03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
137017406 (casc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
137017406
NCBI-ProteinID:
XP_067237728
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All DBs
Position
3:27885823..27908013
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AA seq
761 aa
AA seq
DB search
MADRRRRRRRASQDSEEEDESASGSESGRSSSAGRKPRGKDPEPVESPAERVATKRDDES
ECESEDGVGEAVLSDYDSADLEENGSHTEGGEEEEEGEHFSDDEASRPAAEPKPAADAPT
ELGEAELGEVEERDEEVKEVKTDEKGNLAGERQSGDGQESTEDPENKSGSKGQKLDDDED
RKNPAYIPRKGLFFEHDVRGQATEEERPKGRHRKLWKDEGRWEHDKFREEEQAPKSREEL
IALYGYDIRNGTGPSDGRSYRSRKPRYSGSPSREPRRHRDGEKPVRTTWQGPPPGHRNAP
QSVTLQSGPPPAPPAAPKPSGRPSTQLPQRSFQGSRASSAPHRTEGRGHPKPSLDGPPPR
GVRPQSGEGERGPRLRGRGSHAVHADRSPAVVVEDIRSEEEEEEGEIPTATTTYTAHHYK
TERERVPSPRKQDPGPVMEGGSAAGQMRESSPPQERTVEKKSYSLVRRATRTRTSDLGKQ
ASLDDSSPAVQQTPATAKSESWQEHSDAGTQGGLTGLDQDLARLSLAGQNWAQSPPSYLQ
AEMRGIRSSMHIGGPPQYGNMEDMSVGGGRAKRYSSQRQRPVPEPAPMHIGVMEGHYYEP
MSFQGPIYTHGDSPAALPPQGMLVQPEMHLPHPTHPGHPGLHPHQSGGPMPNPALYAAPP
VSLSPGQPPPQQLLPPPFYPPPGVMTFGNTNYPYPAGATLPPMYPNPQAQSQVYGGVTYY
DTVQQQAQPKRSPPRRSSHPVTVRPPPPEDQSRKPAEEIRS
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcggcgacggagacggcgcgcctctcaggacagcgaggaggaggacgag
tccgcctcgggctccgagagcgggagatcctcctcggccggccggaagcctcgcggaaaa
gatcccgagccggtcgaatcaccagcggagcgcgtcgccaccaaaagagacgatgagtcg
gagtgtgaaagtgaagatggtgttggtgaagcagtgctatcagactatgacagcgctgat
ctggaggagaatggatcgcacacagagggaggagaggaagaggaggaaggagagcatttc
agtgatgacgaggcctcccgccctgctgcagaaccgaagcctgctgcagatgccccgaca
gagcttggtgaagcagagcttggtgaagtggaggagagagatgaagaggtcaaggaggtt
aaaacagatgagaaggggaatctagctggggaacgacagagtggggacggacaggagagc
acagaggaccctgagaataaatcagggagtaaaggccagaagctggatgatgatgaggac
aggaagaatccagcatacatcccccgaaaaggccttttctttgagcatgacgtgagaggc
caggctacagaggaggagaggcctaaaggcagacacaggaagctgtggaaggacgagggc
cgatgggaacatgacaagtttcgtgaagaggaacaggcaccaaagtcccgcgaagagctt
attgctctttacggttatgacatccgcaacggcacagggccgagtgacggacggtcgtac
cgctcccgaaaacccagatattctggttcacccagtcgggagcctaggcgccaccgtgac
ggagagaagcctgtacgtacaacatggcaggggcctccacctggccaccgcaatgcccct
cagtctgttaccctacagtcaggacctcctcctgctccccctgcagcacccaaaccctct
gggcgaccctcaactcaacttccacagcgcagcttccagggcagtcgagcctcgtcggcc
ccccacaggacagaaggtcgagggcacccgaagcccagtctagacggcccgccacctcga
ggtgtgcggccacagtctggggagggtgaaaggggcccgaggctcaggggccgtggctct
catgctgttcatgctgaccgtagcccagccgtggtggtggaggacatccgcagcgaggaa
gaagaggaagagggtgagattccaacagcgacgactacatacaccgctcaccactacaag
acggagagagaacgggttccgtcaccacgaaagcaagatccaggcccagtgatggaaggg
ggcagtgcagctggtcagatgagagaatcatctccgcctcaagagaggacggtggagaag
aagtcgtactcgcttgtgcggagggcgactcgaacgcgaacgtctgatctcggtaagcag
gcgtcgttagatgactcttcgcccgcggtccagcaaaccccagcgacagcaaagagcgag
tcgtggcaagagcatagtgatgcaggaacacaaggaggactaacggggctcgaccaggac
ctggcccgcctcagtctggcagggcagaattgggcccagagcccaccctcctacctgcag
gctgagatgagaggcatccgtagttccatgcacataggaggccctccacagtatggaaat
atggaggatatgagtgttggtggtggccgagctaagcggtattcatcacagcgccagagg
ccagttcctgagcctgcgcccatgcacataggagtcatggagggccattattatgaaccc
atgtctttccagggaccaatctacacgcatggggacagtccagcagcgctgccccctcaa
ggcatgcttgttcaacctgagatgcacctgccacaccccacccaccctggtcacccaggc
ttgcatccacaccagtcgggagggccaatgcccaatccggctctttacgccgctccaccc
gtttctttgtcacctgggcaaccgcctccacagcagctgctacccccacccttctaccct
ccaccaggcgtcatgacgtttgggaacaccaactacccatacccagccggagctacgcta
cctccaatgtaccccaacccccaggcacagtcacaggtctacggtggtgtgacgtactac
gacacggtacagcagcaagctcaacccaaacgctccccgccccgacgttcctctcatccc
gttacagtcagacctccccctcctgaggaccagagcagaaagcccgctgaggaaattcgc
tcctag
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