Chanodichthys erythropterus (predatory carp): 137017470
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Entry
137017470 CDS
T10334
Symbol
clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
cery Chanodichthys erythropterus (predatory carp)
Pathway
cery03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cery00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
137017470 (clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cery03019
]
137017470 (clp1)
Enzymes [BR:
cery01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
137017470 (clp1)
Messenger RNA biogenesis [BR:
cery03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
137017470 (clp1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
ATP_bind_1
TniB
AAA_18
CbiA
AAA_16
AAA_22
SRP54
nSTAND3
MMR_HSR1
PduV-EutP
Motif
Other DBs
NCBI-GeneID:
137017470
NCBI-ProteinID:
XP_067237886
LinkDB
All DBs
Position
1
Genome browser
AA seq
445 aa
AA seq
DB search
MTAEAPEKSAEEGLSSSGSAGTSGTRFDLEKETELRFEVEAGERVQLELFSGMAEVFGSE
LNRNKKYTFGPGSKIAVFTWHGCTVSLSGKTEVAYVSKDTPMMLYLNTHAALEQMRRQAE
KDNERGPRVMVVGPTDVGKTTVCRVLLNYAVRLGRRPTLVELDVGQSSVSVPGTMAALCI
ERPADVEEGFSVQAPLVFHFGSTTPGTNIKLYNKLTSNLAEVFSQRCEVNRKASVGGCII
NTCGWVKGSGYQALVHCASAFEVDVVLVLDQERLYNELKRDLPHFVRVVLLPKSGGVVER
SKDCRRESRDEKIREYFYGFRGTSFYPHAFDVRFSDVRIYKIGAPSIPDSCLPLGMSQDD
TQLKLVPVSPGRDLTHHVLSVSSVEDEAEAGAGQSRGILESPVCGFIVVTAVDTQAQVMT
VLSPAPRPLPRHTLLIMDIRFIDLK
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgactgcagaagccccagaaaagtcagccgaggagggcctgagctcgtcgggcagtgct
gggacttcaggcacacgattcgacctggagaaagagacagaactgcgttttgaggtcgaa
gcaggagaacgagtccagctcgagctgttctccggtatggcagaggtgttcggatccgaa
ctgaaccgaaataagaagtacactttcgggccaggctctaagatcgctgtgttcacctgg
catggatgcactgtgtcactttcaggcaagacagaggtggcttatgtgtccaaagatacc
cccatgatgctgtatctcaacacccatgcagctctagagcagatgagacgtcaagcggag
aaagacaatgagagaggccctcgggtaatggtagtcggaccaactgatgtgggaaagaca
acagtatgtcgagtgttgttaaactatgctgtgcgactgggacgaagacctacgctggta
gaactggatgtcggccagagcagcgtttctgtgcctggaactatggcagctctgtgcatc
gagcgtcctgctgacgtagaagaaggcttctctgtgcaggccccgcttgtttttcacttt
ggctccaccacaccaggaacaaacatcaaactttacaacaagctgacttcaaaccttgca
gaagtgttttcccagcgctgcgaagtgaaccgcaaagctagtgtgggtggctgtataatt
aacacctgtggatgggtcaaaggttccggctaccaggctctggtccactgtgcttcagcc
ttcgaggtggatgttgttctagtcctggaccaggagcgtctctacaatgagcttaaacgt
gacctgccacactttgtacgtgtcgtccttcttccaaaatctggtggcgtggtggagcgc
tccaaggactgccggcgagagtcacgggacgaaaagatccgggaatacttctatggtttc
cgtggaacttccttttaccctcacgcctttgatgtgcgcttttcagatgttcgcatttac
aagatcggtgcgccctctattccagactcctgtcttcccctgggtatgtctcaagacgac
acccagcttaaacttgtcccagtcagccctggcagggatttgacccaccacgtgctgagt
gtgagttcggtggaggatgaagccgaggcaggtgcgggtcagagcagagggattctagag
agccccgtgtgtggcttcatagtggtgacggcggtggacacacaagctcaggtgatgacg
gttctctcaccagcgcccagaccactgccacgacacactctgctcatcatggacattcgc
ttcattgaccttaaatag
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