Chanodichthys erythropterus (predatory carp): 137019255
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Entry
137019255 CDS
T10334
Symbol
fdft1
Name
(RefSeq) squalene synthase isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
cery Chanodichthys erythropterus (predatory carp)
Pathway
cery00100
Steroid biosynthesis
cery01100
Metabolic pathways
Module
cery_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
cery00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
137019255 (fdft1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
cery01006
]
137019255 (fdft1)
Enzymes [BR:
cery01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
137019255 (fdft1)
Prenyltransferases [BR:
cery01006
]
Terpene biosynthesis
Squalene/phytoene synthase
137019255 (fdft1)
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
Octopine_DH
GST_C_8
Motif
Other DBs
NCBI-GeneID:
137019255
NCBI-ProteinID:
XP_067240622
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Position
4:complement(22039880..22053498)
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AA seq
447 aa
AA seq
DB search
MAGVGGKSAVSFSVLKRSFSLRGSPRSVLTGGRRSAQEGRLVARPPHPLRAHRHPAYVCF
SYQDSMSETLRTCYVYLNQTSRSFAAVIQALDGELRHAVCIFYLVLRALDTVEDDMTIPL
EKKVPLLHDFHTFLYQPEWCFTESREKDRRVLEDFPTISVEFRNLGQEYRDVISDICHRM
GVGMAEFLEKKVASMKEWDKYCHYVAGLVGIGLSRLFSASQLEDVEVGRDTELANSMGLF
LQKTNIIRDYLEDQQQGRAFWPQEAWSQFASRLEDLAQPQHLSSALSCLNLLVTDALRHV
PDVIAYLSRLRNQSVFNFCAIPQVMAIATLSACYNNPQVFQGVVKIRKGQAVTLMMQATN
MGAVQSIIAQYSQEILQKVSVTDPSREKTLCILNLICEKSLSGAALSSRAHHISPVYVSA
AMLLAALSWQYLNATAGPPGGADMQGH
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atggctggagttggcggaaagagcgcagtgtcgttctccgtgctcaagcgctcgttctcg
ctgcgcggctccccgcggtcggtgctcactggcgggcggcgcagcgcgcaggaagggcgg
ctggtggcccgccctcctcacccgctcagagctcaccgacaccccgcgtatgtgtgtttc
tcctaccaggactccatgagcgaaaccctgcggacctgctacgtgtatctgaaccagacc
agccggagcttcgcggcggtgattcaggccctggatggagaactgcggcatgccgtgtgt
attttctacctggttctacgagccctggacactgtagaagacgacatgaccatcccgctg
gagaagaaggtcccgctgctgcacgacttccacacgttcctgtatcagcccgaatggtgc
ttcacagagagcagagagaaagaccgacgggtcctggaggatttccccacgatttcagtg
gagttcaggaacttgggccaagagtatcgggacgtcatttcagacatctgtcaccggatg
ggtgtaggaatggctgaattcctggagaagaaagttgcttcaatgaaggagtgggacaaa
tactgtcattacgtggcgggtctggtggggatcgggctgtcccgactcttctcagcgtcc
cagctggaggatgttgaggtgggccgggacacggagctggccaactccatgggtctgttc
ctccagaagaccaacatcatcagggactatctggaggaccagcagcagggacgggccttc
tggccgcaggaggcctggagtcagtttgcgtcccgtctggaggatttggcccagcctcag
cacctgagctccgccctgtcctgcctcaacctgctggtgaccgacgccctccgccacgtc
cctgatgtcatcgcgtacctgtcccgactccgcaaccagagcgtcttcaacttctgtgcc
attcctcaggtgatggcgatagcgactctgtctgcgtgctacaacaatcctcaggtgttt
cagggtgtggtgaagatccggaagggtcaggcggtgacgctcatgatgcaggccacaaac
atgggcgccgttcagagcatcatcgctcagtacagtcaggagatcctgcagaaagtctcc
gtcacggatccgtcccgggaaaagactctgtgtatcctgaatctcatctgtgagaagagc
ctgtccggagcggcgctgtcgtcccgagcgcaccacatctctccggtgtacgtgtcggcg
gccatgctgctggcggccctcagctggcagtacctgaacgccacggcggggccaccaggg
ggcgcagacatgcagggacactga
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