Chanodichthys erythropterus (predatory carp): 137020244
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Entry
137020244 CDS
T10334
Symbol
col9a1b
Name
(RefSeq) LOW QUALITY PROTEIN: collagen, type IX, alpha 1b
KO
K08131
collagen type IX alpha
Organism
cery Chanodichthys erythropterus (predatory carp)
Pathway
cery04510
Focal adhesion
cery04512
ECM-receptor interaction
cery04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cery00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
137020244 (col9a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
137020244 (col9a1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
137020244 (col9a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cery00535
]
137020244 (col9a1b)
Proteoglycans [BR:
cery00535
]
Extracellular matrix (ECM) proteoglycans
Others
137020244 (col9a1b)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
137020244
NCBI-ProteinID:
XP_067241616
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Position
5:complement(34134159..34159721)
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AA seq
534 aa
AA seq
DB search
MARAAGVRGPFLLILLEITIICTAQRAGAGPPGPPGVPGIDGIAGERGDPGEDGSAGPDG
DTGKPGSAGLPGLPGADGLTGPIGEPGLDGPPGQKGEPGKPGPRGEAGVGPDGPIGQPGP
GGLPGELGKVGTPGAMGVRGPQGPRGPTGPRGAAGMLGGTMELCPNACPVGAPGHPGLPG
MKGHKGVKGEAGEPGKQGHKGEEGDQGAPGEVGAQGPTGPQGIRGATGMIGSKGELGLRG
VDGVPGPQGVAGATGDRGQRGGMGEGGPKGEQGPQGPRGNTGLPGPKGDGGLPGVDGREG
IPGMPGAKGTTGKAGSPGEVGLQGLPGLPGSPGPKGGAGEKGNAGQPGLIGTMGSAGRAG
ERGEQGELGPIGPIGQPGDRGEQGPPGPMGKPGARGPKGDLGLPGLPGPPGLPGIKGDRG
EAGEPGPKGEQGDQGAEGTPGDKGDLGDPGQPGAKGEVGNQGDPGNRGPEGARXGSLALR
GPLVVLDHVACRGTEELQVLVAPRDQRVKNQVINTSDKSVCELCRSSWPSWLPV
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atggctcgcgctgcaggtgtgcgcgggccctttttactcattttgttggagataaccatc
atctgcacagcacagagggctggtgctggccctcccggtcctcccggtgtgcctggaata
gacggcattgctggggagagaggtgaccccggtgaagatggttcggctggtcctgatgga
gatactggaaaacctggttctgctggacttcctggattacctggagccgatggattgact
ggccctataggagaaccaggcctcgatggccctccaggacaaaagggggaacctggcaaa
cctggacccagaggagaggcaggtgttggacctgatgggccaattggacaaccaggacca
ggaggacttccgggagagctgggaaaagtgggaacccctggagcaatgggtgtgagaggg
ccacagggaccccgtggaccaacagggccccgtggtgctgcagggatgctgggaggaaca
atggaactgtgccccaatgcttgcccagttggtgcacctggtcatcctggtttgcctggg
atgaagggtcataaaggggtgaaaggagaagccggagagcctggtaaacaaggacacaag
ggagaggagggagatcagggggcacctggagaggtcggcgctcaaggcccaactgggccg
cagggaattcgaggtgccactggtatgattggctccaaaggagaactgggccttcgaggt
gttgatggtgtcccaggccctcagggggttgcaggggcgacgggggatcgaggccaaaga
ggaggaatgggagaaggtggacctaaaggcgaacagggacctcaagggccaagaggcaac
acaggtcttccagggccaaagggagatggtggtttgccaggtgtggatggacgtgaggga
atccctggcatgccaggtgccaagggtaccacaggaaaagctggaagccctggggaagtc
ggccttcaaggactccctggtttgccaggaagcccagggccaaaaggtggagcaggagag
aagggtaatgcaggacaaccaggcctcattggcactatgggatctgcaggcagagcgggt
gagcgtggagaacaaggagaattgggacccattgggcctattggacagcctggagacaga
ggagagcaggggccacctggaccaatgggaaaaccaggagccagaggtccgaaaggtgat
ttgggcttgcctggacttcctggaccgccgggcctgccaggaataaaaggagataggggt
gaagcaggtgaacctggaccaaagggagaacagggagatcaaggtgccgagggaacgcca
ggagacaagggagatcttggtgatcctggccaacctggagctaaaggagaagttggtaac
cagggagatccgggtaatagagggccagaaggtgcccgtnngggcagcctggcattgagg
ggccccctggtagtcctggaccacgtggcatgcaggggaacagaggagctccaggtcctc
gtggctcccagggaccagcgggtaaagaaccaagtgatcaacacatcagacaagtctgta
tgcgagttatgcaggagcagctggcccagttggctgccagtctga
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