Chanodichthys erythropterus (predatory carp): 137020302
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Entry
137020302 CDS
T10334
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
cery Chanodichthys erythropterus (predatory carp)
Pathway
cery03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cery00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
137020302 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cery03400
]
137020302 (msh6)
DNA repair and recombination proteins [BR:
cery03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
137020302 (msh6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
137020302
NCBI-ProteinID:
XP_067241716
LinkDB
All DBs
Position
5
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AA seq
1370 aa
AA seq
DB search
MAKQSSLFNFFTKSPPLAVKAKSNPSPVEADAVSRSNTSPKEEAKVNSRKTPSKPAKSQA
KAGHAKLFGEKADTGKEREQSSMFSAGTLVWAKMEGHPWWPCMVVPQPLTGQQMRGRGRD
QRLHVHFFDEPPTRGWVNTKYIREYQGSDSVDAKSGGMFFSGKPVIRKAMELADAAMKQS
PEQRLKMSMCMDPSDEEEENEEDMEVEKSTISDVEMSEEEAEEKKKPSRRSSRAAAEKSQ
KSKRRRIVVASDSDDSGEEFKPDQAGGSSDEEDEEGVSSGAEEEESEPEPEPDSPVKPVK
RKRPLEKPVKSKSKPDTPKRAPATLPSVASDTKSRLSAFSAPDNFESQSSSANGTDGGST
VWDHEKLDWLQDGKRKDAQRKRQSDENYDPTTLYVPDDFLNRTTPGMRRWWQLKSEMFDT
VLFYKVGKFYELYHMDAVIGVNELGLTFMKGTWAHSGFPEIGFGRFSDVLVQKGYKVARV
EQTETPEMMEARCNKLARPTKFDRVVKREVCRIITRGTQTYSVLDGAPSETQSKYLLSIK
EKSEEDSAGHGHIYGVCFIDTSVGHFHVGQFQDDRHCSRLRTLVAHYSPAQVLFEKGNPS
AETLKLFKALLSSTLQEGLNAGSQFWDAQKTLKVLAEEDYFKESKASTDDEKGSVLPPTL
KAMTSECDALSLTPKTGYELALSALGGCMFYLKKCLVDQELLSMGNFEEYVPVDVEMEQA
GGASCFFAQTRQRMVLDGVTLANLEILQNSSTGGPEGTLLERLDTCCTPFGKRLLKQWLC
APLCNPSSIGDRLDALEDLMGAPSQATEVTDLLKKLPDLERLLSKIHSMGTPLKGQDHPD
SRAILYEEVVYSKRKIADFLAALEGFKVMNEIVSIMEPVAEGFRSKLMRQVVLLKTENDD
GLFPDLSPELKRWDTAFDHQKARTTGVITPKAGFDPEYDQALNGIKDCERGLQEYLDRQK
KRLGCKNLSYWGTGRNRYQLEVPDSVSERSVPEEYEVRSTKKGWKRYSTKEIEQLFSEIQ
SWEDKRDAALKDCMRRLFYNFDKNYKDWQTAVECMAVLDVLLSMSRYSQSGDGPMVRPEM
VLPGDGSQSPPFLDLRGSRHPCVTKTFFGDDFIPNDVFIACPSGEEEEGQDNGKALAPCV
LVTGPNMGGKSTLMRQCGLVVILAQLGCYVPAESLRLTPVDRVFTRLGASDRIMSGESTF
FVELSETASILLHATNHSLVLLDELGRGTATYDGTAIASAVVKELSEKICCRTLFSTHYH
SLVEDHVQDPAVRLGHMACMVENECEDPSQETITFLYKFICGACPKSYGFNAARLANIPE
EVIQSGHKKAREFERSTVSLRIFKKLCSFAEDSSADREQFATLVQMIGSL
NT seq
4113 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcaaagctccctttttaacttcttcaccaagtcacctcctctggctgtgaag
gccaaatcaaacccttctccagtggaggcagatgcagtgagcagatccaacacctcccct
aaagaagaggccaaagtcaacagcaggaaaacaccatcaaaacctgccaaatctcaagct
aaagctggacatgcgaaactgttcggagagaaagcagacactggaaaggagagagaacag
tcctccatgtttagtgctggcactctggtatgggccaagatggaaggacatccctggtgg
ccctgtatggttgttcctcaacctctcaccggacagcagatgaggggccgtggccgagac
caaaggcttcacgttcactttttcgatgaaccgccaacccgtggttgggttaacacaaaa
tacataagagagtaccaaggctctgatagcgtagacgccaaatctggaggcatgttcttc
agtggtaagcctgtgatacgtaaagcaatggagctggcagatgctgcaatgaagcagagt
cctgagcagagactgaaaatgtctatgtgcatggatccctcagatgaagaagaggagaat
gaggaggatatggaggttgagaaatcaaccatatcggatgtggaaatgtctgaggaagag
gctgaagaaaagaagaagcccagccgacgttcatctcgtgctgcagctgaaaagagtcag
aagtcgaagcgtaggcgcattgtggtggcatctgacagcgacgactccggcgaagagttc
aaacctgatcaagcaggaggaagcagtgacgaggaagacgaggagggagtgagtagcggg
gctgaggaagaagaaagcgagccggagcccgaaccagacagccctgtgaaaccggtcaag
cgcaaacgtcctttagagaagcctgttaaatcaaagagcaaaccagataccccaaaacga
gcacctgcaactcttccatccgtggcgtccgacaccaaatctcgactttctgctttctcc
gccccggataacttcgaaagtcagagtagcagtgcaaatgggacagatggaggatctact
gtgtgggaccatgagaaactcgactggctgcaggacggcaagagaaaggacgcacaacgt
aaacgacaatctgatgaaaactacgaccccacgactctatacgttcctgatgatttcctg
aacaggactacgccaggaatgcgccgttggtggcagctgaagtctgagatgtttgatact
gttctgttctacaaagtcggaaagttctacgagctctaccatatggacgcagtgattggc
gtcaacgaactcggccttaccttcatgaaaggtacttgggcccattctggcttccccgag
attggctttggacgcttctcagacgtactcgtgcaaaagggctacaaagtggctcgtgtg
gaacaaaccgagacgcctgagatgatggaagcacgatgcaataaattggcgcgtcccacc
aaatttgaccgcgtcgtcaagcgagaggtttgccgaatcatcacgcgaggtactcagacg
tacagcgtgcttgatggcgccccttctgaaactcaaagtaaatatctgttgagcattaaa
gagaagagcgaggaggacagtgcaggccatggccacatctacggggtttgtttcattgac
acctcggtgggacacttccatgttggtcaattccaggatgaccggcattgttctcgtttg
cgtaccctggtggcacactattctccagcccaggttcttttcgaaaagggcaacccgtca
gctgagacgctgaaattatttaaggccctcttgtcgtccactttacaagaaggcctcaat
gctggttcacagttttgggatgcccagaagaccctaaaggtccttgctgaggaagactac
ttcaaagaaagcaaagcgtcaactgatgatgaaaagggatcagtgctgcctccaactctc
aaagctatgacatccgaatgtgacgctctaagtctcactccaaagacgggatatgaactc
gctctttcggcccttggcggctgcatgttctacctcaagaaatgtctagtggaccaggag
cttctttccatgggcaacttcgaggagtatgttcctgtcgacgtggagatggagcaagct
ggaggagcatcttgtttttttgcccagacccgtcaaagaatggttttggatggagtgacc
cttgctaaccttgagatccttcagaatagctcgaccggcggtcctgagggaaccctactt
gaacgattggacacgtgttgcactcccttcggcaaaaggttgttgaagcaatggctctgc
gcccctctttgtaatccatcctccattggtgatcgcttagatgctctggaggacctgatg
ggcgctccgtcccaagcgaccgaagtcaccgacctactaaagaagcttccggatctcgaa
aggctacttagcaagattcacagcatgggtactcctttaaaaggacaggaccacccggac
tcccgagcaattctgtacgaggaggtcgtctacagcaaacgtaagatcgctgactttctc
gcagcccttgaggggtttaaagttatgaacgaaatcgtgtcgatcatggagcccgtcgct
gaaggcttccgatcgaaactgatgcgccaagtggtgctcctcaagacagaaaacgatgat
gggcttttcccagacctttcgccagagctcaaacgttgggacactgctttcgaccatcag
aaagctcgcactacaggtgtcataactccaaaagctggctttgatccggagtacgaccaa
gccctaaacggaattaaagactgcgagagaggcctgcaggaatatctggaccgacagaag
aagagattgggctgtaagaatctatcctactggggaacgggaaggaaccgctaccagcta
gaagttccggatagtgtttccgagaggagcgtgccagaggagtacgaggtgaggtccact
aagaagggctggaagcggtactctaccaaagagatcgaacagctgttttcagaaatacag
agctgggaagacaaaagagacgcagctctgaaggattgcatgagaagactcttctacaat
ttcgacaagaattacaaagactggcagaccgctgttgagtgcatggcagtacttgatgtg
ctgttgagcatgtcccggtacagtcagagcggcgacgggcccatggtgagaccagagatg
gttcttccgggtgacgggtctcagtcgccccccttcctggatctgcgagggtctcgtcac
ccttgtgtcaccaagaccttcttcggtgatgacttcattcccaatgacgtcttcatcgct
tgccctagcggtgaagaagaagagggtcaagataatggtaaagcacttgccccatgtgtg
ttagtcaccgggccgaacatgggaggcaagtccaccctaatgagacagtgtggtctggtg
gtgatcttggcccagttgggctgttacgtgcctgctgagagtttgcgcctcactcccgtg
gaccgagtgttcactcgtcttggcgcgtctgatcgtataatgtcaggtgaaagtacgttc
tttgtggagctcagcgagactgctagcatacttttgcacgccaccaaccactcccttgtc
ctgcttgatgaactgggcagaggtacggccacgtatgacggcacagccattgcgagcgca
gtggtgaaggagctgtcggagaagatctgctgccgtaccttgttctccactcattaccac
tcactggtggaggaccacgtccaggaccctgctgtgagactcggacacatggcctgtatg
gtggagaatgaatgcgaggaccccagtcaggagaccatcactttcctctacaagttcatc
tgtggcgcgtgtcccaaaagttacggcttcaacgcagcccgcttggcaaacatcccggag
gaagtcatccaatcaggacataagaaggcccgtgagtttgagaggagcaccgtgtctctc
aggatattcaagaaattgtgctcattcgctgaagactcctccgctgatcgagagcagttc
gccacactggttcagatgatcggcagcctgtga
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