Chanodichthys erythropterus (predatory carp): 137020542
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Entry
137020542 CDS
T10334
Symbol
col17a1b
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XVII) chain
KO
K07603
collagen type XVII alpha
Organism
cery Chanodichthys erythropterus (predatory carp)
Pathway
cery04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
cery00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
137020542 (col17a1b)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
137020542
NCBI-ProteinID:
XP_067242341
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Position
5:15545026..15565409
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AA seq
1553 aa
AA seq
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MDDLRQQREYSGGSSGDRGISETVSTTRITALPPRGFSASANKGLLSTSGSPSLEKNILT
QNNSSSYFSSSSVSASAGGLGSGSREYLLEESSVSKGKKAGGASGVFESVSGSGSGSGLR
VRSSSTDGMRRAQDSPSFLERKSKITHSRRYDGSSSESSSPEMTRKDYSSTRGRSQSRET
EIRTRLQSASPSTRWTELDDVKKLLKGSRSASVSPTRSLSSSPLPIPRKATTLDTKISTK
QVEQYDTTLLDADLASYTWNTSTLPSTVSTGAAYDFHSNTNNMSNGASLVSSTSPSSLSV
YGFHNNLAPAPVPVSAVLTSSGVNTHSGYGVQKNYSTSPNSTLAVSTGVSTAGYGVQKNY
SSSPNCTLAVSTSVSAAGVCYNHSVKDLXLLXFSKDVSNLGPGTRTLNENVSKRYLTREK
ENIPLKRETDELILTKDSGKQFTNSAPNGAAGSYSDVSLKKETMMTSYSESSPVKSSSGA
HYGATSVSTKDKATHADIYKDEDDCKCGGGLCGCGPKCCSWWKWLLGFLLSLLLLLGLLF
GLISLSDEVKKLKSRVSALEGIPSSTNARTSRLSVSIDDIDRYKEAGSKAAYVNSLDSAV
YSDNSVLQRDVQQILKAEMQSEAMKAFLASSVKAERGLPGPKGDTGSPGTRGDNGFPGLP
GPPGMPGHPGREGQKGDKGSAGEHGAEGPPGFRGRDGQPGARGEPGPPGAGEKGERGIPG
SPGQVGPPGPKGASGLHGEQGPQGFRGEPGLAGPKGDRGAPGPPGSKGDHGDRGDNGLPG
IPGAAGRQGPAGEKGSKGAAGTHGADGEKGQRGEPGSIGLPGIRGPPGPPGDAGQPGTPG
IQGPPGLPGNPGQPGAKGETGEAGRVINAAGSSSVAIPGPPGIPGPPGPPGPPGISGPTG
PAGHPGQPGLKGNKGDQGEPGIVVNTGETLVATRSERQYGAANGAVTGPPGPPGPPGPPG
RPGDSRAGPPGEPGSPGYGRPGPKGDKGDPGNFVPNSGTFFAGPPGPPGPTGPKGATGAQ
GPRGYQGEPGQPGLPGSPGRVMSEYGVGQGPPGPPGPPGPPGREGRKGDPGVPGLTYQGE
SRVAVGPQGRPGPPGPPGPPGAPGHSSGSHSASDYRHYIMEYMQSDNMRQHLSRIQGPQG
PPGPPGASVSVEDVASRVIAYIQRSGISGTSISQGAQGPPGLPGPPGPPGSITADYIISL
LQREEVRRYVAGPPGPPGSPGISPTSFNAQEVANYAIRIMNEQGITGRPGPPGPPGPPGQ
AGATYNEITALIQRSGLGGGVGRPGPPGPQGIQGPPGPPGPSGGSSSGISGYRLEDIQLY
LQKSGFRGPPGLPGPPGPQGPPGDTRGLVSYTGSSAREQIRAELQEYLNSDSMRRYIQSP
PGPPGPPGQKGERGEPGLSYQNPRSQYRYGTEITEPVDYSNVAIKVTDYIKNQGLLQDLT
EGYWRTQAGSIQGPAGPPGPPGPPGYSRVIGTYGNVTADLMDFFRTHGTIPGPPGRPGHK
GDRGYPGPKGDKGERGSSGIPGLPGQRGPEGPRGEKGEKGDIQTGRWKRATGV
NT seq
4662 nt
NT seq
+upstream
nt +downstream
nt
atggatgatttaaggcaacaaagagagtattcaggagggagttcaggagacagaggtatc
tctgaaacagtctctaccaccagaattacagctttgcctccacgaggcttcagtgcatcc
gccaacaagggcttgttaagcacctctgggtctcctagcctggagaagaacattttgact
caaaacaacagcagttcttatttctcttcctcatctgtgagtgcgagtgcaggtgggtta
ggctctggatcaagggaatatctgctagaggagtcatctgtgagtaagggcaagaaggca
ggtggtgcttctggagtttttgagagtgtctctggatcaggatcaggatcaggactgagg
gtgagatccagctccactgatggcatgagaagagcacaagactccccttcgtttctggag
aggaaaagcaaaatcactcattcacgtcgttatgatggaagctcaagtgaaagctcatcc
ccagagatgacaagaaaagactatagttcaactagaggaagaagtcaaagcagagagacg
gaaatcaggaccagactgcaaagtgcatctccctctactagatggactgagctggatgat
gtgaagaagctgttgaagggatcacgctccgccagcgtcagccccacacgatctctctcc
tcctcccctctgccgatacctcgcaaggccaccaccttagacaccaagatctccaccaaa
caagtcgagcaatatgacaccactcttcttgacgctgaccttgcctcgtacacatggaac
acctccacactgccctctaccgtctccactggtgctgcttacgacttccacagcaacacc
aacaacatgtcaaatggagcttcgcttgtcagcagcacatcaccatcctccttatcagtg
tatggcttccacaacaatttagctcctgctcctgttcctgttagtgcagttctaacttcg
agtggagttaacacacactcaggatacggagtgcagaagaattattcgacaagtcccaac
agcactcttgccgttagcacaggcgtctccactgcaggatatggagtgcagaagaattat
tcctcaagccccaactgcactcttgctgttagcacaagcgtatccgctgcaggtgtttgt
tataatcactcagtaaaggatttatagttactgtagttctcaaaagacgtatccaattta
ggacctggtacaaggacccttaatgagaatgtgtcaaagagatacctgacgcgggagaaa
gagaacattcctttgaagagagagactgacgaattaatcctgaccaaagacagtggcaaa
cagtttaccaacagcgcccccaatggggcagcagggtcatattcagatgtttcattgaag
aaggaaactatgatgaccagctattctgaaagttctcctgtgaagtctagctctggcgca
cattatggggcaacatcagtgtcaacaaaagataaagctactcatgcagatatttataag
gatgaggatgactgtaagtgtggaggcgggctttgtggatgtgggccaaagtgctgttcc
tggtggaagtggctgctgggttttttgctcagcctcctgctgctccttggccttctgttt
ggactcatttctttatctgatgaggttaagaaactaaagtctcgtgtcagcgctcttgag
ggaataccctcctccacgaatgcccgcacaagtcgcctgtctgtttctattgatgacatt
gacagatataaagaagctggaagtaaagcagcatatgttaattcactggattctgcagtt
tattcagacaattctgtgctgcagagagatgtacagcaaatactgaaagcagagatgcag
tctgaagccatgaaagcgttccttgcttcttcagttaaagctgaaagaggacttccaggg
cctaaaggtgacactggatctccaggaacgaggggagacaatggttttccagggctgcca
ggtccaccaggaatgccaggacatccaggacgggaaggacaaaaaggggataaagggagt
gcaggtgaacatggtgctgaaggtccaccaggattcaggggaagagatggtcaacctgga
gcccgtggagagccaggaccacctggagccggagagaagggtgaaaggggtattcctgga
tctcctggtcaagttggtccacctgggcctaaaggtgctagtggtttacatggtgaacaa
ggccctcaaggcttcagaggtgaacccggtcttgccgggcctaaaggtgatagaggagct
ccaggtccacctggaagtaaaggtgatcatggtgacagaggagacaatggattgccaggt
attcctggtgctgcaggacgacagggaccggctggtgagaaaggatctaaaggagcagca
gggactcatggagctgatggtgaaaagggccaaagaggtgagccaggctcaattggtttg
ccaggaatcagaggaccacctgggccacccggtgatgctgggcaaccaggaactccaggg
attcaaggacctccaggtctacctggcaatcctggtcagcctggagctaaaggtgagact
ggtgaggctggaagagtgatcaatgcagcaggttctagctcagtggcaatcccaggaccg
cctggaatccctggtcctcctggcccacctggacctccaggaatatcaggtcccactggc
cctgctggacatcctggtcagcctggtcttaaaggtaataagggagatcaaggagaaccg
ggtattgttgtgaacactggtgagactttggttgcaacgcgttcagaaagacagtatggt
gctgcaaatggtgctgttactgggccacctggtcctcctggtcccccagggcctcctgga
cgtccaggagattccagagcaggtccaccaggcgaaccaggctcaccaggatatggtaga
cctggtcctaaaggagacaagggagatccaggaaactttgtgcctaattcaggaacattt
tttgcgggaccacctgggccgccaggacccacagggcctaaaggagcgacaggtgcccaa
ggtccaagaggatatcaaggggaaccaggtcagcctggccttccagggagtcctggtaga
gttatgtcggagtatggtgtcggtcaagggccacctggtcctccagggcctcctggacca
cctggacgagagggtcgtaaaggggatcctggagtaccaggtttaacataccaaggagag
tcaagagttgcagtcgggccacaggggcggcctggtcctccaggacctcctggtccaccc
ggtgctcccggtcattccagtggatctcattctgcctcagactatcgtcattacatcatg
gagtatatgcaaagtgacaatatgaggcagcatttgtccagaattcaggggccacaaggt
ccaccaggtccacctggggcttcagtgtctgtagaggacgtggcatctcgggtcatcgct
tacattcagcgctctggaatcagtggtaccagtattagccaaggtgctcaaggtcctcca
ggacttcctggccctcctggcccacctggaagtataactgctgactacataatttctctt
ttacagagagaagaagtgaggcgttatgtggctggccctccaggaccaccaggttcaccg
gggattagtcctactagctttaacgcacaggaagtggcaaactatgccatcagaataatg
aatgagcaggggattacaggcagacctggaccaccaggccctcctggcccacctggccag
gcaggtgctacttacaacgaaataactgctctgattcagaggtcagggcttgggggaggc
gttggacgtccagggccccctggtcctcaagggatacagggaccccctggtccacctggt
ccctcaggaggcagctcctctggaatctcgggttacagactggaggacatccagctctac
ctgcagaagtctggttttaggggacctcctggccttcctggcccaccaggaccccagggt
cctccaggtgacactaggggccttgtatcatatacaggatcttctgcacgagaacagatc
cgtgctgagctgcaggagtacttgaacagcgactctatgaggcgctatattcagagtccc
cctgggcctcccggaccccctggccagaagggtgaacgtggtgaacctggactcagttat
cagaatcccagaagccagtaccgctatggcactgagatcactgaaccagtggactactcc
aatgttgcaataaaagtgactgattatattaaaaatcaaggtctcctgcaggacctgaca
gagggatactggagaacacaagcaggaagtattcaaggacccgctgggcctccaggtcct
cctggcccacctgggtacagccgtgtgattggtacctatgggaatgtgactgcagacctc
atggatttctttagaacacacgggaccatcccagggcctcctggcaggccaggacacaaa
ggggacagaggatacccaggacctaaaggagacaaaggggaaagaggaagctcagggata
cccggcctcccggggcaaagaggaccagagggaccaaggggagaaaagggtgaaaaaggt
gatatccagactggtagatggaaacgggccactggtgtgtaa
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integrated database retrieval system
