Chanodichthys erythropterus (predatory carp): 137021792
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Entry
137021792 CDS
T10334
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b
KO
K19719
collagen type II alpha
Organism
cery Chanodichthys erythropterus (predatory carp)
Pathway
cery04510
Focal adhesion
cery04512
ECM-receptor interaction
Brite
Glycosaminoglycan binding proteins [BR:
cery00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
137021792 (col2a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
137021792
NCBI-ProteinID:
XP_067244847
LinkDB
All DBs
Position
6:complement(34311529..34364597)
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AA seq
1459 aa
AA seq
DB search
MILSADSRTLLLFVATLVAFSAVVKCQEENEQDPGSCTQDGQSYSDKDVWKPEPCRICVC
DTGSVLCDDIICEELKDCAKPEIPFGECCPVCAADQPSSPGRTGEQGPRGDRGEKGEKGS
PGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGGNFAAQMAGGFDDKAGAAQMGVMQGPMGP
MGPRGPPGPNGSPGPQGFQGNPGEAGEPGSSGPMGPRGPPGPSGKPGDDGEPGKPGNSGE
RGPPGPQGARGFPGTPGLPGIKGHRGYSGLDGAKGESGAVGAKGESGSPGESGAPGPMGP
RGLPGERGRPGPSGAAGARGNDGLPGSAGPPGPVGPSGAPGFPGSPGSKGEAGPTGARGP
EGAQGPRGESGVPGSPGPSGVSGNPGTDGIPGAKGSVGAPGIAGSPGFPGPRGPPGPQGA
TGPLGPKGQSGDPGLAGFKGEAGPKGEIGSAGLQGSPGPAGEEGKRGPRGEPGAAGPVGP
PGERGAPGNRGFPGQDGLAGPKGAPGERGAAGVSGPKGASGDPGRPGEPGLPGARGLTGR
PGDAGPQGKVGPSGAAGEDGRPGPPGPQGVRGQPGVMGFPGPKGGNGEAGKAGEKGLAGA
PGLRGLPGKDGETGAAGPPGPAGPAGERGEQGQPGPSGFQGLPGPPGPPGEGGKPGDQGV
PGEAGAAGATGPRGERGFPGERGGAGPQGLQGPRGLPGTPGTDGPKGGVGPGGTPGAQGP
PGLQGMPGERGTSGIPGPKGDRGDNGEKGPEGAPGKDGARGLTGPIGPTGPAGPNGEKGE
SGPAGPSGAAGTRGVPGDRGETGPPGAAGFAGPPGADGQPGIKGEQGEGGQKGDAGAPGP
QGPSGAPGPQGPTGVSGPKGARGAQGPPGATGFPGAAGRVGPPGPNGNPGPAGPAGPPGK
DGPKGVRGDGGPPGRPGDAGLRGSAGPSGEKGDPGEDGPPGPDGPSGPQGLAGQRGIVGL
PGQRGERGFPGLPGPSGEPGKQGAPGGSGDRGPPGPVGAPGMTGAAGEPGREGNPGSDGP
PGRDGSAGIKGDRGDTGPAGAPGAPGGSGAPGPVGPTGKQGDRGEAGPKGPSGSPGPAGA
RGMPGPQGPRGDKGEAGDSGERGQKGHRGFTGLQGLPGPPGQPGDQGASGPSGPGGARGP
PGPVGPAGKDGANGSPGPIGPPGPRGRSGETGPSGPPGNPGPPGLPGPPGPGIDMSAFAG
LSQLEKGPDSYRADQAAEGNLQNDAEVDATLKSLNNQVESIRSPDGTKKSPTRTCRDLKL
CHPDWKSGEYWIDPNQGCTVDAIKVFCNMETGETCVYPKPANIPRKNWWTNKGAERKHVW
FGEAMNGGFHFSYGDENLAPNTASIQMTFLRLLSTEASQNLTYHCKNSIAYMDEANGNLK
KALLLQGSNDVEIRAEGNSRFTYSVLEDGCKRHTGQWSKTVIEYKSQKTSRLPIVDIAPM
DIGGAHQEFGVDVGAVCFL
NT seq
4380 nt
NT seq
+upstream
nt +downstream
nt
atgatcctgtcggcggattcaaggactttactgctatttgtggcaacactagtcgcattt
tcggccgttgtcaaatgccaagaggagaatgaacaagacccaggcagctgcacgcaggac
ggccagtcatatagtgacaaggacgtgtggaaacctgaaccgtgtcgcatttgcgtttgc
gacaccggctcggtcctgtgcgacgatatcatctgcgaggagctgaaagactgtgccaaa
cccgagatcccgtttggggagtgctgcccagtctgtgccgctgaccagccatcctcccct
ggtcgtacaggagaacaagggccacgcggagatagaggagagaagggggagaagggaagt
ccaggcccccgtggaagagatggagagccaggaacccctggaaaccccggccctcctgga
ccgcccggtccaaacggacccccaggcctcggtggaaactttgccgctcagatggctggt
ggatttgatgacaaagcaggagcagcacagatgggagtgatgcagggaccaatgggtccg
atgggtccacgaggaccaccaggccccaatggatctcccggcccacaaggatttcaaggc
aaccctggagaagccggagagcccggatcatccggcccaatgggtcctcgtggccctcct
ggcccctcaggaaaaccaggagatgatggcgaacctggcaaacctgggaacagtggtgaa
cgtggacctcccggacctcagggagctcgtggattcccaggaacaccaggtctacctgga
atcaagggacacagaggatattcaggtctcgatggtgctaaaggagagtctggagccgtt
ggggcaaaaggtgagagcggctctcctggagaaagcggtgctcctggaccgatgggtcca
cgcggtttgcctggtgaaagggggcgtcctggaccgtctggagctgctggtgctcgtgga
aatgatggtttgcccggctctgctggtcctcctggtccagtcggtccgtctggagctccc
ggtttcccaggatcccccggttcaaagggtgaagcaggacctaccggagcccgtggaccc
gagggagctcaaggaccccgtggagagtcaggcgtccctggatctccaggaccatctgga
gtatctggtaaccctggtactgatggcatccccggagctaaaggatcagtgggtgctcct
ggtatagctggctctcctggttttccaggccctcgcggccctcctggacctcagggagcg
acgggtcctctggggcccaagggacagtctggtgatccgggtctcgcagggttcaagggt
gaagctggtcctaaaggagaaattggtagcgctggtcttcaaggttcccccggccctgcc
ggagaggaaggtaagcgaggacccagaggagagcctggtgctgctggacccgtcgggccg
cctggagagagaggagctcctggtaatcgaggttttcctggacaagatggtctggctggt
ccaaagggcgctccgggtgagcgtggagctgcaggcgtatcgggccctaagggagccagc
ggagatccaggacggcctggagaaccgggtctgcctggtgcaagggggctgacgggacgt
cccggtgatgccggtccacagggcaaagtcggtccatctggcgctgctggtgaagacggc
cgtccgggacccccgggacctcagggtgttcgcggtcagcctggagtgatgggattccct
ggacccaagggtggcaatggtgaggctgggaaggctggagagaagggactcgctggagct
ccgggtttgcgtggtctgcctggtaaagatggtgagacgggtgctgctggaccccccgga
cctgctggtcccgcaggagaaagaggagagcagggtcaacccggaccatcgggcttccag
ggtctgcccggaccacctggtccccctggtgaaggaggtaaacctggtgatcagggtgtt
ccaggagaggctggagccgcaggggccactggacccagaggtgaacgtggtttcccagga
gagagaggaggtgcagggccgcagggcctccaggggcctcgtggtcttccaggaactcca
ggaactgacggacccaagggcggtgttggtccggggggaactcctggtgctcagggacct
ccgggattacaggggatgcctggagagagagggacctctgggattcctggaccaaagggc
gacagaggtgacaatggtgagaaaggacctgaaggcgctcctgggaaagacggcgcaaga
ggtttaacgggtccaattggtcctacgggtcctgcgggacccaacggtgaaaagggagaa
tctggaccggcagggccgtctggagctgctggtactcgtggcgttcctggtgaccgagga
gagaccggtcctcctggtgctgctggttttgctggtccacctggtgcagacggacagcct
ggcatcaagggagagcagggtgaaggtggacagaagggtgatgccggtgcaccgggccct
caggggccttctggagctccaggtcctcagggaccaactggtgtgtctggaccgaaagga
gctcgtggtgctcaaggacctccaggtgccacaggtttccctggagccgcaggtagagtt
ggacctcctggtcccaatggtaacccgggtcccgctggtcctgctggccctcctggtaaa
gatggtccaaagggtgtgcgtggtgacggtggtcctcctggaagacccggtgacgctggg
ttgcgtgggtcggctggtccttctggcgagaagggagatcctggagaagatggtcctccc
ggtccagatgggccttcaggtcctcagggtctggctggtcagcgtggaattgttggactc
cctggacagcgtggagaaagaggtttccccggcctgcctggaccctctggtgagcctggg
aaacaaggagctcccggaggatctggagaccgtggaccgcctggacctgtgggagcgcct
ggtatgaccggagctgccggagagcctgggagagagggcaatcctggatctgatggtcct
cctggccgagatggttctgcaggaataaagggtgacagaggtgacactggtccagctggt
gctcctggtgctccgggtggttctggtgcccctggtccagtcggacccactggtaaacag
ggagacagaggagaggccggacccaaaggaccttctggatctccagggcctgctggagct
cggggaatgcctggaccacaagggccacgtggagataagggagaagctggcgactcaggt
gagagaggacagaaaggacatagaggtttcaccggtcttcaaggtctgcctgggcctcct
ggccagcctggtgaccaaggtgcttctggaccttctggacccggtggagcaagaggaccc
ccaggccctgttggtccagctggaaaagatggagcaaatggttcgcctggacctattgga
ccccctggacctcgtgggcgttctggagagactgggccatccggcccccctggaaatcct
ggaccccctggtcttcctggcccgccgggacctggcatcgacatgtctgcttttgctggt
ctgtctcagcttgaaaagggtcctgattcctacagggcagaccaagctgcagaaggcaac
cttcagaatgatgccgaggtggatgccactctgaaatccctgaataaccaggtcgagagc
attcgtagccctgacggtactaagaagagccctacccggacctgcagagacctgaaactc
tgccacccagactggaagagtggtgaatactggattgatcctaaccagggctgcaccgtt
gatgctatcaaggtattctgcaacatggagaccggcgagacttgcgtctatccaaaacct
gccaacatcccacgcaagaactggtggaccaacaagggtgctgaacgcaaacatgtttgg
ttcggagaagccatgaatggtggattccattttagctatggagacgaaaatttggcacct
aatacagcaagtattcagatgaccttcctaagactgctgtccacagaggcctcgcagaac
ctcacctaccactgcaagaacagcatcgcctatatggatgaggccaatggcaacctgaag
aaggctcttctgctgcagggatccaatgatgtggagatccgagctgagggcaacagtcgc
ttcacatatagtgttcttgaggatggttgcaagagacacacaggacaatggagcaagaca
gtaatcgagtacaaatcacagaagacttcacgcctacccattgtggacatcgcacctatg
gatattggaggagcacatcaggagtttggagtggacgtgggtgccgtctgtttcttgtaa
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