Chanodichthys erythropterus (predatory carp): 137023889
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Entry
137023889 CDS
T10334
Symbol
pdzrn4
Name
(RefSeq) PDZ domain-containing RING finger protein 4
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
cery Chanodichthys erythropterus (predatory carp)
Brite
KEGG Orthology (KO) [BR:
cery00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cery04121
]
137023889 (pdzrn4)
Enzymes [BR:
cery01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
137023889 (pdzrn4)
Ubiquitin system [BR:
cery04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
137023889 (pdzrn4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
137023889
NCBI-ProteinID:
XP_067247104
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All DBs
Position
8:12069290..12099364
Genome browser
AA seq
760 aa
AA seq
DB search
MGCNLCTLQKREEHYKLLYEIAQVNGREFSKSGHEGTVEAMRKEPIVVQVLRRGPSARNQ
NSLQEVCVVDVCTQTDITFEHIMALAKMRPTTPPVPDICPFLLSDSCHSIQTMEHEYFDC
PEYVASTQAEVDRAVEFECEEVELCRMNSQEKLGLTLCYRTDDEEDMAIFVGQVELNSIA
ARDGRIREGDRILQINGHDVQNREEAVALLSNENSRSIVLLVTRPEGQMDGSWLDEDHHD
FLEELKMEILEEQKREAKRVRVVSVNVLQSKRHEEASASTDTATCSSSILEKDSGVKCSF
EESSEYELLSHPQTQTQKQLRDRWEAGSHLVPMDTVNLARQEKGQEGRLSENGVECDHFQ
QLLELKCQIRNGGECGLVYRRSSTIECSLTEQGGSGVARELHMLNEELRSIERECQSIMQ
AHQLRRSKHDSPRTDKESRLRRGKLADINEHPERLQSEKLRDKDSSSAYNTAESSRSTPL
GTEGSPDHSLQRRVHLTNQRNLRSTQHLQRPSQAFSSSLEQSPSNPSESDPALPADDERC
EKERNRNRVATARHYHSPYHSNTTTTQPPGTRHYQSYLQLLQQHSSSSLEYSQSQLSLLS
LRGRPGPSQPGRIEWKVKVRADGTRYVARRPARDRILRERALRIREERSGGMTTDDDAVS
ELKMGRYWSKEERKQQLARAREQRRRREFMQRSRLECLRETMGTASGEVSILELSHKKML
KKRNKKILDNWMTIQELMSHGARAPEGTKVHNAFLSVTTV
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgggctgtaacctgtgcacgctgcagaagagagaggagcactataagctgctgtacgag
attgcacaggtgaatgggcgtgaattttccaagtctggacatgagggaacagtggaggcc
atgcggaaggaacccattgtggtgcaggtgctgaggcggggaccctctgcccggaaccag
aacagcctacaggaagtgtgtgtggtggatgtatgcactcagacagacatcacctttgag
cacatcatggctctggctaagatgagacccactaccccacctgtgccagacatctgcccc
tttctgctgtcggacagttgtcattccattcagactatggagcatgaatattttgattgt
ccagaatatgtggccagcactcaggcagaggtggacagggcagttgaatttgagtgtgag
gaggttgagctctgtcgaatgaacagccaggaaaaactgggcctgactctctgttatcgc
actgatgatgaggaagatatggcaatttttgttggtcaggtcgagctcaacagcatagct
gcaagggatggacgcattagagagggagacagaattttacagataaatggtcatgacgta
cagaacagggaagaggctgttgctctcctctcaaatgaaaattccagatccatagtatta
ctcgtcaccagacctgaaggacagatggatggaagctggctcgatgaggaccatcatgat
tttctagaggagctgaagatggagattttagaagaacagaaaagggaagcaaagcgagta
agggttgtatctgttaatgttttgcagtcaaaaagacacgaggaagcctccgcaagtaca
gatacagcaacatgttcctcttccatactagagaaggacagtggtgtgaaatgcagcttt
gaggagagttctgaatatgaattgctctctcatccccaaacacagactcaaaaacaactt
cgagacaggtgggaagcaggctcgcatttggttcctatggacaccgttaacttagccagg
caggagaagggtcaggagggcaggttgagtgagaatggggtggaatgtgaccatttccag
caactcctggagctaaagtgccagatacgcaatggtggagaatgcgggttggtctacagg
cgaagtagtactatcgagtgcagcctgactgagcagggtggaagtggagtggcacgggag
ctgcacatgctcaacgaagagctgcgcagcattgaacgtgagtgccagagcatcatgcaa
gcccaccagttgcgcaggagtaagcatgactcaccccgaacggataaggaaagtcgactg
cgtcgtggcaagcttgcggatattaacgagcatcctgagagactacaaagtgagaagctc
agagataaagacagctctagtgcctacaatacagccgaaagttcccgctcaactccattg
ggaacagaaggatcacccgaccactcgctacagcgtcgagtccacctgaccaatcagagg
aatctgcggagtacccaacacctgcagagacccagccaggccttttcaagcagcttggaa
caaagccccagtaacccctcggagtcagacccagcgcttcctgctgatgacgagcgctgt
gagaaagaaagaaaccggaatagggttgcaaccgctcggcactaccattcgccctatcac
agcaacaccacaacaacccagcctcccggcacacgccattaccagagttacctacagctc
ctacaacaacattcctcttcctctctggaatattcccagagccagcttagcctcctcagc
ctccgtggacggcctggaccctcacaacctggccgaattgaatggaaagttaaagtgcga
gcagacggaaccaggtatgtggcacgtcggcccgcacgagaccgtatcctacgcgaaaga
gccttacggatccgagaggaacgcagcggtgggatgactacggatgacgatgcagtcagc
gagctgaagatggggcggtactggagtaaagaagaacgaaaacagcagctagcaagagca
agagaacagcgacgcaggagggagttcatgcagaggagccggcttgagtgcctcagggag
accatggggacggcaagtggggaagtcagcatcctggagctcagccataagaagatgctg
aagaaacgaaacaagaagatccttgacaactggatgaccattcaagagctcatgagccat
ggagcaagagcacctgagggcaccaaagttcacaatgccttcctttcagtcaccacagtt
tag
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integrated database retrieval system
