Chanodichthys erythropterus (predatory carp): 137024151
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Entry
137024151 CDS
T10334
Symbol
rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cery Chanodichthys erythropterus (predatory carp)
Brite
KEGG Orthology (KO) [BR:
cery00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cery03016
]
137024151 (rtcb)
Enzymes [BR:
cery01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
137024151 (rtcb)
Transfer RNA biogenesis [BR:
cery03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
137024151 (rtcb)
Prokaryotic type
tRNA splicing ligases
137024151 (rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
ACP_syn_III_C
Motif
Other DBs
NCBI-GeneID:
137024151
NCBI-ProteinID:
XP_067247456
LinkDB
All DBs
Position
8:complement(1534645..1540356)
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AA seq
505 aa
AA seq
DB search
MSRTYNDELQYLDKIHKNCWRIKKGFVPNMQVEGIFYVNDPLEKLMFEELRNACRGGGFG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMENPDAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQSMFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIFND
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKITVNDRQLACARITS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFNTTPDDLDMHVIYDVSHNIAKVEE
HMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcacttataacgatgagcttcagtatctggataaaatccacaaaaactgctgg
cggatcaagaagggtttcgtgcctaacatgcaggtggagggtattttctatgtcaatgat
cctctggagaaactgatgtttgaggagctgagaaacgcctgtcgtggtggagggtttggt
ggtttcttacctgctatgaagcaaattggaaacgttgccgccctgccgggaatcgtgcat
aggtctatcggcttacccgacgtccactctggatatggttttgccatcggaaacatggct
gcgtttgacatggaaaacccggatgccgtggtctctcccggtggtgtcgggtttgacatc
aactgtggcgtgagactgctgcggacgaacctggatgagggcgacgtgcagccggtgaag
gagcagctggcgcagtccatgtttgaccacattcccgtcggagtcggatccaagggcgtc
attccaatgggagcaaaagatctggaggaagctctggagatgggcgttgattggtctctg
agggaaggatacgcctgggccgaggataaggaacactgtgaggaatacggccgaatgctg
caggccgatcccaacaaagtctcgtccaaagccaagaagagaggactaccacagttggga
acgttgggtgcaggaaaccactacgccgagattcaggtggtggacgagatcttcaatgat
tacgccgcaaagaagatgggcatcgaccacaagggccaggtgtgtgtgatgatccacagc
ggcagtcgaggcctcggccaccaggtggcgacagatgctttggttgcaatggagaaggcg
atgaagcgagacaagatcactgtgaatgaccgtcagctggcctgcgctcgcatcacgtct
cctgagggtcaggactatctgaagggcatggcggccgccggaaactacgcctgggtcaac
cgctcctccatgaccttcctcactcgccaggcgttctctaaagtcttcaacacgacccca
gacgacctggacatgcacgtcatctacgacgtctctcacaacatcgccaaggtggaggag
cacatggtggacggcaaacagaagacgcttctcgtgcacaggaagggctcgacgcgggcg
tttcctccacaccatccgctcatacctgtcgactatcagctaacgggtcaaccggttctg
atcggaggaacgatgggcacctgcagttacgtgctgacgggcacagagcagggcatgacg
gagacatttggcaccacgtgtcacggagcgggtcgagctctttccagagccaaatccaga
cgcaacttggacttccaggatgttctggataaactggcagacatgggcatcgccattaga
gtggcgtcaccaaagctggtgatggaggaggctcctgaatcctacaagaacgtcacagat
gtggtaaacacgtgtcatgacgccggcatcagtaagaaggccatcaagctccgacccatc
gctgtgattaaagggtaa
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