Chanodichthys erythropterus (predatory carp): 137024203
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Entry
137024203 CDS
T10334
Symbol
cpsf6
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6 isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
cery Chanodichthys erythropterus (predatory carp)
Pathway
cery03015
mRNA surveillance pathway
cery03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
cery00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
137024203 (cpsf6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
137024203 (cpsf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cery03019
]
137024203 (cpsf6)
Messenger RNA biogenesis [BR:
cery03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
137024203 (cpsf6)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RSLD_CPSF6
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
137024203
NCBI-ProteinID:
XP_067247586
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All DBs
Position
8:3934375..3946954
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AA seq
591 aa
AA seq
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MADGVDHIDIYADVEEEFNQESDYPVHEQIDLYDDVISPSANNGDAPEDRDYLDNLPAPG
GNEGSKGAPPNVVYTYTGKRIALYIGNLTWWTTDEDLTDAIRSIGINDVLEIKFFENRAN
GQSKGFALVCVGSDSSSRKLMDLLSKRELHGQNPIVTPCNKQSLSQFEMQSRKIFVHSGT
QSGQMSGEGKAGPPGGGRSGFPLGRGRGRFPGQPGPGGDRFPGPVGPGGPPPHFPGMQGP
PRPPSGPPGPPGPPGPPPPGQGLPPPLGGPPHRGDRPPPPVLFPGQFGQPPMGPMPPGPP
PPGYGPPPGPPPPQQGPPPPGPFPPRPPGPLGPPLGLAPPPHMQGPPPGGPPPAPHVNPA
FFPPPGNNNMPSSDGRGPPPGDPYGRPPPYDRDYGPGGSNFRPPLICGFEPWINEGLVDV
KNSGQHLHNTSDQGDMDASRTPLSEAEFEEIMNRNRAISSSAISRAVSDASAGANMIADY
GSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSYGSVSSRRERSRERDHS
RSREKNRRHKSRSRDRHEDYYRERSRERDRHRERDRDRERDREREREYRHR
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggtgttgaccatatcgatatttacgcggatgtagaagaggaatttaatcag
gaatcagattatcctgttcatgagcagattgacctgtatgatgatgtcatctcaccatct
gccaacaacggggacgcacccgaggaccgagattacctggataacctgcctgcacctgga
ggcaatgagggctccaaaggagctccaccgaacgtcgtctacacctacactggcaaaaga
attgctctgtacatcggcaacctcacatggtggaccactgatgaagatttgacagatgct
attcgctccataggcatcaatgatgtgctggagataaagttttttgagaatagagcaaat
gggcagtcaaaagggtttgcgctggtgtgcgtgggttcagattcctcgtccaggaagctg
atggatctgctgtctaaacgggagctgcacggacaaaaccctatcgtcactccttgcaac
aaacagtcgctcagccagtttgagatgcagtcccgaaaaatttttgtccactcaggcaca
cagtcagggcagatgtcaggagaggggaaggctgggcctccaggaggaggtcgcagcggc
ttccctctcggcaggggtcgagggcgctttccgggccaacctggaccaggcggagaccgc
ttccctggaccggtcggacctggtggacctccaccacactttccaggtatgcaaggacca
cctcgtcctccatctggcccacctgggcctccaggaccccctggcccccctccacctgga
caaggtctgccgccgcctcttggcggacctcctcacagaggagaccgccctcctccaccc
gtcctttttcctggtcagtttggtcaacctccaatgggtccgatgcctcctggcccgccc
ccaccaggatacgggcctcccccaggcccccctccacctcagcaaggtccgccccctcca
ggacccttcccaccccgcccacctggtcctttaggaccaccgcttggccttgcacctcca
cctcacatgcagggacccccacctggaggtccaccaccggctcctcacgtcaacccagcc
tttttccctccacctggaaacaacaacatgccatcgtccgacggcaggggccctccaccc
ggcgacccctacggtcgccctcctccttatgacagagactacggccctggcggcagtaac
ttcagaccccctctaatatgtggctttgagccctggataaacgaggggttggttgatgtg
aaaaactctggccagcacttgcacaatacaagtgatcaaggggacatggatgcgtctcgc
actcctctgagcgaagcagagtttgaggagatcatgaatcgtaaccgagcaatctccagc
agtgctatctcaagggctgtgtcggatgcgagcgcaggtgcgaacatgattgcggattac
ggcagcgctattgagacactggtgacggccatctctctgatcaagcagtcgaaggtttct
gctgatgatcgctgtaaggttctcatcagctccctgcaggattgcttacatggaattgaa
tccaaatcctatggctctgtgtcgagcaggcgggaaaggtccagggagagggaccacagt
cgctctcgtgagaagaaccgtcggcacaagtctcgcagccgagatcggcacgaggactat
taccgggaacgtagccgcgagagagatcgccatcgcgagcgagaccgtgacagagagaga
gacagagaacgtgagagggaatatcgccaccgttag
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