Chanodichthys erythropterus (predatory carp): 137027007
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Entry
137027007 CDS
T10334
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a
KO
K19719
collagen type II alpha
Organism
cery Chanodichthys erythropterus (predatory carp)
Pathway
cery04510
Focal adhesion
cery04512
ECM-receptor interaction
Brite
Glycosaminoglycan binding proteins [BR:
cery00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
137027007 (col2a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
137027007
NCBI-ProteinID:
XP_067250822
LinkDB
All DBs
Position
9:15361496..15382009
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AA seq
1488 aa
AA seq
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MFRLVDSRTLLLLVATQCVLLSLVRCQQEDDQEDLGSCIQDGKQYADRAVWKPEPCRVCV
CDTGAVLCDEVICEDVTDCDNPIIPLGECCPICPAETDEPIESVGAKGQKGEPGDIADVV
GPRGPAGPMGPPGEQGPRGERGSKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPSGLGGNF
AAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPPGAPGPQGFQGNPGETGEPGPAGAL
GPRGPPGPPGKSGSDGEAGKPGKPGDRGPPGPQGARGFPGTPGLPGIKGHRGHPGIDGAK
GEAGAAGAKGEAGSNGESGAPGPMGPRGLPGERGRPGATGAAGARGNDGLPGPAGPPGPV
GPAGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGEAGTPGSPGPAGASGNPGTDGIPGAK
GSAGASGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGERGVVGPQ
GAPGPSGEEGKRGPRGEPGSAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVPGVT
GPKGATGDPGRTGEPGLPGARGLTGRPGDAGPQGKVGAPGAPGEDGRPGPPGPLGARGQP
GVMGFPGPKGANGEPGKTGEKGLVGRPGLRGLPGKDGETGAAGPPGPAGPVGERGEQGQP
GPSGFQGLPGPTGAPGEPGKPGDQGVPGEGGAAGPTGPRGERGFPGERGGAGPQGLQGPR
GLPGTPGTDGPKGAIGPAGAAGAQGPPGLQGMPGERGAVGIAGAKGDRGDSGEKGPEGAP
GKDGARGLTGPIGPPGPSGPNGAKGETGAIGPIGAPGARGAPGDRGEIGAPGPAGFAGPP
GADGQPGIKGEQGESGQKGDAGSPGPQGPSGAPGPVGPTGVTGPKGARGAQGAPGATGFP
GAAGRVGPPGPNGNPGPAGPAGAAGKDGPKGVRGDAGPPGRPGDSGLRGPPGSPGEKGEP
GEDGPPGPDGPSGPAGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGSSGDRGPP
GPVGPPGLTGPAGETGREGNPGSDGPPGRDGAAGVKGERGNTGPIGAPGAPGAPGAPGSV
GPVGKQGDRGENGPQGPAGPPGPAGARGMVGPQGPRGDKGEAGEAGERGQKGHRGFTGLQ
GLPGPPGAPGDQGAAGPAGPSGAKGPAGPVGPAGKDGSNGQPGPIGPPGPRGRSGESGPI
GPPGNPGPPGPPGPPGPGIDMSAFAGLSQPEKGPDPLRYMRADEASSSLRQHDVEVDATL
KSINSQIEDIRSPDGSRKNPARSCRDLKLCHPEWKSGDYWVDPNLGSSADAIKVFCNMET
GETCVKPSTPKIPRKNWWSNKGKGQKHVWFGESMNGGFHFSYADSSQTPSTTSIQLNFLR
LLSTEATQTITYHCKNSVAYMDQATGNLKKAILLQGSNDVEIRAEGNSRFTYGVLEDGCQ
KHTGQWAKTVIEYKTQKTSRLPIVDIAPIDIGGADQEFGVDIGAVCFL
NT seq
4467 nt
NT seq
+upstream
nt +downstream
nt
atgttcagattagtggattcacggactctcctgctacttgtagcaacgcaatgcgttttg
ctatcccttgtaagatgtcaacaagaagatgaccaggaagatttaggcagctgcatccaa
gatggcaagcagtatgcggaccgtgctgtatggaagccagaaccgtgccgcgtctgcgtg
tgcgacactggggcagtgctgtgtgacgaggtcatctgtgaggatgtgacagactgtgac
aatcccatcattccacttggagagtgctgtcccatctgcccagctgaaaccgacgagcct
atcgagtcagttggtgccaagggacagaaaggtgaaccaggtgatattgcagatgtggta
ggaccaagaggacctgctggcccaatgggacccccaggagagcaaggaccacgtggcgag
agaggatctaagggtgagaagggaagtcccggcccaagagggagagatggcgagcctggt
acacctggaaacccaggaccccctggaccaccaggacctagtggacttggaggaaacttt
gctgctcagatggctggaggttttgatgagaaggcaggaggtgctcagatgggtgtgatg
cagggaccaatgggtccaatgggtccccgtggtcctcccggtccgcctggagcacctggc
ccacaaggtttccaaggcaaccctggagagactggtgaacccggccctgctggtgccctt
ggaccccgtggcccaccaggcccccctggaaaatctggaagtgatggtgaggctggcaaa
cctggtaagcctggtgaccgtggacccccagggcctcagggagcccgtggattccccgga
actcctggccttcctggaatcaaaggacacagaggacacccaggtattgatggagctaaa
ggagaggctggtgctgcaggtgctaagggtgaggctggttctaatggtgagagtggtgct
cctggaccaatgggtccacgtggtctgcccggtgagagaggtcgtcccggtgcaactggt
gctgctggtgcccgtggtaatgatggtctgcctggtcctgctggtcctcccggtcctgtt
ggtcctgctggagctccaggtttccctggatcccctggttctaagggtgaagctggtccc
accggagctcgtggacctgagggtgcacaaggaccccgtggagaggctggaacacctgga
tcacctggacctgctggtgcatctggtaaccctggtactgatggtattcctggagccaaa
ggatctgctggtgcttctggcattgctggtgcccctggtttcccaggaccccgtggcccg
ccaggacctcagggagctactggacctcttggacctaaaggacaatctggagaccctggt
atcccaggatttaaaggcgaggctggacccaagggagagcgtggtgttgtaggacctcag
ggtgcccctgggccatctggagaggaaggaaagagaggaccaagaggagagcctggttct
gccggacctctcggaccccctggagagagaggagctccgggtaaccgtggattccctggt
caggatggtctagctggagcaaagggtgcacctggtgatcgtggtgttccaggtgtgacc
gggccaaaaggagcaactggagatcctggccgcacaggcgagcctggtcttcctggagcc
agaggtctgactggacgccctggtgatgctggacctcaaggaaaagttggagcacctggt
gcccctggtgaagatggacgccctggtcctcctgggcctctgggagctcgtggtcagcct
ggagtgatgggattccctggacctaagggagccaatggtgaacctggaaaaactggagag
aaaggacttgttggacgccctggtcttagaggtttgcctggtaaagatggagagactgga
gctgctggtccacctggccctgctggtcctgttggtgagagaggagagcaaggtcagcct
ggtccatctggcttccagggtcttccaggacctactggagcccccggagagcccggtaaa
cctggtgaccagggtgttcctggagagggtggtgctgccggtcccactggaccaagaggt
gaacgtggtttccctggtgagagaggaggtgctggccctcagggtctccagggaccaagg
ggacttccaggaactcccggaactgatggacccaagggtgccattggaccagctggcgct
gctggagctcagggccctcccggtctgcagggcatgcctggtgagagaggagctgttgga
attgctggagctaaaggtgacagaggtgacagcggagagaaaggacctgaaggtgctcct
ggcaaagatggtgcaagaggtttgactggtccaattggtccacctggtccttctggtcct
aatggtgcaaagggtgaaactggagccattggcccaattggtgctcctggtgctcgtggt
gcccctggcgaccgtggtgagattggtgcacctggacctgctggctttgctggaccccct
ggtgctgatggccagcctggaattaagggagagcagggtgagtcaggacagaaaggtgat
gcaggatcccctggaccccaaggaccatccggagcacctggtccagtgggcccaactggt
gttacaggacctaagggagcacgtggagcccaaggagcccctggtgccactggtttccca
ggtgctgcaggaagagttggaccacctggccccaatggtaaccctggtcctgctggccct
gcaggtgctgctggtaaggatggtcctaagggagttcgtggtgatgctggtccaccaggc
agaccaggagattctggactgcgtggacctcctggttctcctggagagaagggagagcct
ggagaggatggtcctcctggtcctgatggtccttctggtcctgctggtcttgctggtcag
cgtggtattgttggtttgcctggtcagcgtggtgaaagaggtttcccaggactcccagga
ccctctggtgagcctggcaaacagggagctcctggttcttctggtgaccgtggaccacct
ggccctgttggacctcctggattgactggacctgctggcgagactggacgtgagggtaat
cctggatctgatggtccacctggtagagatggtgctgctggtgtgaagggtgagcgtggt
aacactggcccgattggtgctcccggagctcctggtgcccctggtgctcctggttctgtt
ggtccagttggcaaacagggagacagaggagagaatggcccacaaggacctgctggcccc
cctggaccggctggagctagaggcatggttggaccacaaggacctcgtggtgataagggt
gaggcaggagaagctggagaaagaggtcagaagggacacagaggattcaccggtctgcag
ggtctgccaggacctcctggtgctcctggagaccagggtgctgctggacctgctggacca
agtggcgctaagggacctgcaggacctgttggaccagctggtaaggacggttctaatggt
cagcctggacccattggaccacctggacctcgtggacgctctggagagtctggcccaatt
ggtccacctggtaaccctggacctcctggtcctcctggtccccctggccctggcattgat
atgtctgccttcgctgggttgtctcagcccgagaaaggacccgatcctctgcgttacatg
cgtgccgatgaggcctccagctctcttagacaacatgatgttgaggtggatgccacactg
aagtcaatcaacagccagatcgaggacattcgcagccccgatggatcccgcaagaaccct
gcacgctcctgccgagacctgaaactctgccaccctgaatggaagagcggtgactactgg
gttgatccaaaccttggtagcagtgctgatgccatcaaagtcttctgtaacatggagact
ggagagacctgtgtgaagcccagcactcccaaaatcccacgcaagaactggtggagcaat
aagggcaagggacagaagcacgtgtggtttggagagagcatgaacggtggattccacttc
agctatgctgatagcagccagactcctagtactaccagcatccagctgaacttcctgaga
ctgctgtctactgaggccactcagaccatcacctaccactgcaagaacagcgttgcttac
atggaccaagccacaggcaacctgaagaaggccattctgctgcagggctccaatgatgtg
gagatcagagcagagggcaacagccgctttacatatggcgtgcttgaggatggctgtcag
aagcacacaggtcagtgggccaagactgtgattgagtacaaaactcagaagacatccagg
ctgcccatcgtggacattgctccaatagacatcggaggagcagatcaggagtttggagtg
gacattggtgcagtctgcttcttgtaa
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