Chanodichthys erythropterus (predatory carp): 137027688
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Entry
137027688 CDS
T10334
Symbol
rc3h1a
Name
(RefSeq) roquin-1a isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
cery Chanodichthys erythropterus (predatory carp)
Brite
KEGG Orthology (KO) [BR:
cery00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cery03000
]
137027688 (rc3h1a)
04121 Ubiquitin system [BR:
cery04121
]
137027688 (rc3h1a)
Transcription factors [BR:
cery03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
137027688 (rc3h1a)
Ubiquitin system [BR:
cery04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
137027688 (rc3h1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-CCCH
Prok-RING_4
zf-C3HC4
zf-CCCH_4
zf_CCCH_4
zf-CCCH_UNK
Baculo_IE-1
FYVE
zf-RING_4
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
137027688
NCBI-ProteinID:
XP_067252125
LinkDB
All DBs
Position
10:12015861..12040577
Genome browser
AA seq
1082 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEESHRKPISLGCGHTVCKMCLNKLHRKACPFDQTAISTD
IEQLPVNTALLQLVSGQVPKPPPVTLLTAAEDVKHYEESRTCVEDLALYLKPLSNTRGAG
LNGATQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ADIDPSPDAPAPTWEQLAKGLEAVRTVVHGLVDFIQNHSKKGGDQQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLGLRRQLSQSLTQLNELDLAAGLLSDEG
LQMEGLPRKPSSITNGILAAGPGSTLAHLVSRGSDPSYEPSHKPGKMDSGSLSAPGSPPD
SLESIPKSGMLNSLSRVASDGSVGQKHMPAVPRVPYPYSPHQSELYYSEARAPPPPSTQY
ESSQYPAGNPYPHHHVHPRYTRHPAPDPGMPPYPDSYPSSYSSKHQYANPSSHYGYPSHH
DGRRHSAYAHPQTFASREEMVRRSPDIPPPLQPQSAAASYLPESAQERYATENYNHSSQI
RNYHRNAYTRAQPSLDYLHRRRQEIMAQLEERKVVSSPPFGSSHSYDPSYPQDMRGQSHY
MEENSHGFGHFRDPDYTASYSPWSCDTFGSYIGSKDMKSKEGMNSMETQNLDKGKSLRAH
NLELQRRAADVKDDDPIIPFGSLPTVSRFGAISRTSKPGYPPNSTMMPLPNSAKHAADYT
YVNHSGWSGDSYQQHQTSQGHFNERSPAVQVREQLRMELQQVNQQISQQTQSRGLEKPSS
VMSQPPRVDWSSGNMSSEQLSLELHQVEREIDIRTQEMAMENHDGKYKRVSVENGQDEHA
LQREDHPLTLSEGLNGSISLVQDCGLVSSSMSSLTSKTSSLSLSSEQVASSPDLPKNGVV
HS
NT seq
3249 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtgcaagccccgcaatggaccgagtttctgttgtgtcccatctgcacgcaaacc
ttcgaggagagccaccgcaagcccatcagcctgggctgcggacacaccgtgtgcaaaatg
tgcctgaacaaactgcaccgcaaggcctgcccattcgaccagaccgccatcagcacggac
atcgagcagctgcccgtcaacactgcgctgctgcagctcgtcagcggccaggtacccaaa
cctccacccgtcaccttactgacagctgcagaggacgtcaagcactatgaagagtcccgc
acgtgtgtggaagacctggcgctctatcttaaaccactgagcaacaccagaggtgcaggg
ctgaatggcgctactcagagcgtgctcagcaggcccatgcagcggaaactggtgactctg
gttcactgccagctggtggaggaagagggccgcatccgggccatgcgggcggcccgttct
ctgggtgaacgtactgtcactgagctcatcctccagcaccagaacccccagcagctctcc
tccaacctgtgggctgccgtcagagccagaggctgccagtttctcggccctgccatgcag
gaagaagcattgaagctggttcttctcgctctggaagatggttcggccctttcacggaag
gttctggtcctgtttgtggtccagagacttgaaccacgttttcctcaggcctcaaaaacc
agcataggacatgtggtgcagctcctctacagggcctcctgctttaaggtcactaaacgt
gatgaggattcctccttgatgcagctaaaggaggagtttcgcacatatgaggctcttcgg
agagaacatgactctcagattgttcagattgcaatggagggtggactgcgtatcgcccct
gaccagtggtcatctctactctatggcgaccagtcccacaagtcccacatgcagtccatt
atagacaagctgcagacaccagcatcctttgctcagagtgttcaggaactcaccattgcc
cttcagagaactggagatccagcaaatctcaaccgcctcagaccccatctggagctgctg
gctgacatcgaccccagcccagatgcccctgcgcccacatgggagcagctagccaaaggg
ttggaagcggtgcgtaccgttgttcacggcctggtggatttcatccagaaccatagcaag
aagggaggtgatcagcagcagccacctcagcacagcaaatacaagacctacatgtgtcgg
gacatgaaacaaaaaggcggctgtcctcgtggagcaagttgcaccttcgctcactctcag
gaagagcttgaaaagtaccgtaagatgaataaacgtttgggattgcgccgacagcttagt
cagtccctgacccagctgaacgagctggaccttgccgctggtctgttatctgacgagggg
ctgcagatggagggccttccacgcaaaccctcttccatcaccaacggcatcctagcagca
ggacctggatccactctggcccacctggtttctagaggctcggacccatcttatgagcca
tcacacaaaccagggaagatggactcggggagcctcagtgccccgggctcacctccagac
tcattggaatccatcccaaaatcaggaatgcttaattctctctctagggtggccagcgat
ggctcagtcggacagaagcacatgcctgctgtgcctagagttccttacccatattcacca
caccagtctgaactgtattactctgaagctagagcgccgccaccaccatccacccaatat
gaatcctcccagtaccctgcaggtaatccttatccccaccaccatgtccacccacgctac
acccgtcatcccgctccagatccaggcatgccaccatatccggactcttatcccagctcc
tactcctcaaagcaccagtatgccaaccctagctcccattatggatacccttcacaccac
gatggccgtcgtcactcagcctacgcccatccccaaacattcgcctcacgggaggaaatg
gtccgaaggagtccggacattcccccgccactacagccccaaagcgccgccgcctcgtac
ctgccggaatcagctcaggaaagatacgccacagagaactataaccactccagtcagatc
aggaattaccacaggaatgcctacacacgagcacagccctccctcgactacctgcaccgt
cgcagacaggagatcatggcccagctggaggagagaaaggtcgtttcctcgccacccttc
ggctcctcgcactcgtacgaccccagctaccctcaggacatgaggggacagagccattac
atggaggagaactcccatggttttggacacttccgggatccggactacaccgcctcatat
tccccttggtcatgtgacacctttggttcctacatcggcagcaaggatatgaagtccaaa
gagggcatgaactccatggaaacacaaaatttagacaaaggcaaaagtctgagagcgcac
aacttggagctccaacgcagagcggcagacgtgaaagacgatgaccccatcattcccttt
ggctccctgccaaccgtgtctcgttttggagccatttcgcgcacgtctaaaccgggctat
ccaccaaacagtacgatgatgcctttgcctaactctgccaaacacgccgctgactacaca
tatgtgaaccacagtgggtggagcggcgactcctaccagcagcaccaaacgtctcagggg
cacttcaacgagcgatcccctgccgtgcaggtgcgtgaacagctgaggatggagctacag
caggtcaaccagcaaatcagtcaacagactcagagccgcggccttgagaagccaagctca
gtgatgtcccagccacctcgagtggactggtcctctgggaatatgtccagtgaacagctg
agtctcgagctgcaccaggtggagagagagattgacattaggacacaggagatggccatg
gagaaccacgatggcaagtacaagcgcgtctcagtcgaaaacggacaagatgaacacgct
ttgcaacgagaggatcatccactaactcttagtgagggcttaaacggctccatcagtttg
gtccaggactgcggtcttgtcagtagcagcatgtcctcgctgaccagcaagacgtcatct
ctcagtttgtcctctgaacaggtggccagcagccctgatctgcccaagaacggagttgtc
cactcctag
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