Chanodichthys erythropterus (predatory carp): 137028858
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Entry
137028858 CDS
T10334
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cery Chanodichthys erythropterus (predatory carp)
Pathway
cery03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cery00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137028858 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cery03019
]
137028858 (mtrex)
03041 Spliceosome [BR:
cery03041
]
137028858 (mtrex)
03009 Ribosome biogenesis [BR:
cery03009
]
137028858 (mtrex)
03016 Transfer RNA biogenesis [BR:
cery03016
]
137028858 (mtrex)
Enzymes [BR:
cery01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137028858 (mtrex)
Messenger RNA biogenesis [BR:
cery03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
137028858 (mtrex)
Spliceosome [BR:
cery03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
137028858 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
137028858 (mtrex)
Ribosome biogenesis [BR:
cery03009
]
Eukaryotic type
Pre-60S particles
Helicases
137028858 (mtrex)
Transfer RNA biogenesis [BR:
cery03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
137028858 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
nSTAND3
Motif
Other DBs
NCBI-GeneID:
137028858
NCBI-ProteinID:
XP_067254266
LinkDB
All DBs
Position
10:53268681..53309721
Genome browser
AA seq
1035 aa
AA seq
DB search
MADAFGDDLFSVFDEEQAGSSKKATPKSAAQAGKTPNKADKPQSDSAAVRKRDADNDGPD
EMVLGKRQKLETVSAEEINLSELMPKVKAEQVETVEGCTHEVVLPANEEYTPLKPRVGKA
AKEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIK
ALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFD
EIHYMRDSERGVVWEETIILLPDNVHHVFLSATIPNARQFAEWICHLHKQPCHVVYTDYR
PTPLQHYVFPAGGDGLHLVVDENGEFREDNFNTAMQVLRDVGDTGGNTGGKWDPKGRRGG
TKGPSNVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNTDDEKKLVEEVFSNA
TDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETFAM
GINMPARTVLFTSARKFDGKDFRWITSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSPAV
GKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAVPGVVEKMKK
LEEEYNAIRIPNEESVVTYYKIRQQLAKLGKEIEEFIHKPRYCLPFLQPGRLVRVKKEDL
DFGWGVVVNFQKKANVKAGGGDIDPLFVVEVLVHCSKDSVKNAATEAAKPAGPGEKGEMQ
VVPVILHLITSISSVRLYIPKDLRPYENRQSMLKSIQEVQKRFPDGIPLLDPIDDMGIKD
PALKKVIQKVEAFEHRMYTHPLHSDPNLEAVYTLCEKKALIAGDIKAAKRELKRARTVLQ
MDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMVFNGLFNDLTAEQATA
LLSCFVFQENANEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLDVDEDSYLNQFRPHLM
DVVYTWANGSSFSQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAMGI
TKIKRDIVFAASLYL
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcctttggagacgatttgttcagcgtgtttgatgaagaacaggccggttcc
agcaaaaaggccactccaaagtccgctgctcaggcagggaagactcctaataaagctgat
aaaccgcagagcgattcagcagctgtccgcaaaagagatgcagacaatgatggtccagat
gagatggtgcttgggaaaaggcaaaagctggaaacagtgtcagctgaggaaatcaatctg
tcagagctcatgcctaaagtgaaggcggagcaggtggagacagtggagggctgcactcat
gaggtggttcttcctgccaatgaggaatacactccgctgaaaccacgtgttggaaaagct
gctaaggagtaccctttcatactcgaccctttccagcgtgaggccatcctgtgcatcgac
aacaaccagtctgtgcttgtgtcggcccacacatcggcaggaaagacagtgtgtgcggaa
tacgccattgctctggcgctcagagaaaagcagcgagtcatcttcaccagtcccatcaag
gctttgagcaatcagaagtacagagagatgtatgaagagttccaggatgtgggtctgatg
accggtgatgtcactattaaccccacagcttcctgtctggtcatgaccactgagattttg
aggagcatgctgtacagagggtcagaggttatgagggaggtggcttgggtcatctttgat
gagatccattacatgagagactcagagcgtggagtggtttgggaggaaaccatcattcta
ctgccggacaatgttcaccatgttttcctgtcagccaccattcccaacgctcgacagttt
gcagagtggatttgtcacctccacaaacagccctgtcacgtggtgtacacagactaccgc
cccactccactgcagcactacgtttttccagcagggggcgatggactccatcttgttgtg
gatgagaacggagagttcagagaagacaattttaatacagctatgcaggtcctgagggat
gtgggggacactggaggcaatactgggggcaaatgggaccccaaaggcagaaggggtgga
accaaaggtccttctaacgtcttcaagattgtaaagatgatcatggaaaggaacttccag
ccggtgatcatctttagcttcagtaagaaagaatgcgaggcctacgcactccaagtggct
aaactggatttcaacacagacgacgagaaaaaactggtggaagaagtgttcagcaatgcc
acagactgcctctctgatgaagataaaaagctgccacaggtagagcatgttctgccattg
ctgaagagaggaattggaattcatcatggcggcctcctcccgatcctcaaagagaccatt
gagatcctgttctctgaggggctgctaaaggccttgtttgctacagaaacatttgccatg
gggatcaacatgcctgctcgaactgtgctcttcaccagtgcgcgcaaatttgatggcaaa
gacttccgttggatcacctctggagagtatatccagatgtcaggacgtgccggcagaaga
ggaatggacgagaggggaatagtcattttcatggtggatgagaagatgagccctgcggtg
ggcaaacagttactgaagggttcggcagaccctctgaacagtgcgtttcacctcacctac
aacatggtgctcaatctactacgtgtggaggagatcaacccagagtacatgctggagaaa
tccttctaccagttccagcactatagagccgtgcctggcgttgtggagaagatgaaaaag
ctggaggaggagtataatgcgatacgaatccccaatgaagagagcgtggtgacctactac
aagatccgtcagcagctggccaaactaggcaaagaaatcgaggaatttattcacaaacct
agatactgcttgcccttcctgcagccaggcagactggtcagggtgaaaaaggaagatctg
gattttggttggggtgtagttgtcaatttccaaaagaaggcaaatgtcaaggccggaggt
ggtgatattgacccgttgtttgtggtggaagttctggttcactgcagcaaagacagtgtg
aagaacgcagccacagaagcagccaaaccagcaggcccaggggaaaagggtgagatgcag
gttgttcctgtgattcttcatctcatcacctctattagctctgtgcgcctgtatatcccc
aaagacctgcggccctacgaaaaccgacaaagcatgctcaaatccatacaggaggtgcag
aaacgtttcccagatggcattccgctgcttgatcccatagacgacatgggtatcaaggat
ccagcactgaagaaggtcattcagaaggtggaggcattcgagcacaggatgtacacgcac
cccctgcacagcgaccccaacctggaggccgtttacacactctgtgagaagaaagcactg
attgcaggggacattaaagcggcgaagcgtgagctgaagagagctcgtaccgtgctgcag
atggacgagctgaagtgcagaaagcgtgtgctgcggcgcttgggattcgccacttcctct
gatgtcatcgagatgaaaggccgtgtggcctgtgagatcagcagtgcagatgagctgttg
ctgacagagatggtgtttaacgggctgttcaatgacctgacggcagagcaggccactgcg
ctcctcagctgcttcgtcttccaggaaaacgctaatgagatgcccaaattgacggagcag
ctggccggaccgctgcgacagatgcaggaatgtgccaagcgaattgctaaggtgtccgca
gaggccaagctggacgtggacgaggactcttacctgaatcagttccgcccacacctgatg
gatgtggtctacacatgggccaatggctcctcattctctcagatatgcaaaatgaccgat
gtgtttgaaggcagtataatccgctgtatgcgcagattggaggagctcttgaggcagatg
tgccaggcggccaaggccattggaaacacggagctggagaataagtttgcaatgggtata
acgaagattaagagggatatcgtgtttgctgccagcctttacttgtga
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